PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS27808 to PF03235 (DUF262)

VIMSS27808 has 217 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-37  114.8   0.6    3.7e-37  114.5   0.6    1.1  1  VIMSS27808  


Domain annotation for each sequence (and alignments):
>> VIMSS27808  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.6   3.7e-37   3.7e-37      10     198 ..      12     208 ..       5     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 3.7e-37
      DUF262  10 sg.fliPdyQRgyvWdeeqvedLiedike.....lrgyplGsivlw.keaede..dgkyeviDGQQRltTltlllkaleedekekeeeeklklekreed 99 
                 +g f+iP+yQRgy+W+ +q++d+++d+++     ++ +++ s+ l   e+  e  d+ +e+iDGQQRl T ++ll               l  +++++d
  VIMSS27808  12 KGvFEIPSYQRGYAWQVRQWKDFWNDLEHvsklgNKFHYMHSLTLRgLEN--EleDSAFEIIDGQQRLATSLILLGL-------------LAKTTKHKD 95 
                 3459***********************99****************64344..345******************9999.............222233333 PP

      DUF262 100 kdffekllenekeelek.leklkelngkkfkdlseeekseseknlikayelikek..............ai.eklklveielddeddedeafeiFerlN 182
                  ++ +  le    ++   l++       ++kdl++ + s + knli+ay ++kek              ++ +k+ + + el+  d++ + f  Fe++N
  VIMSS27808  96 PKYNSMNLEPVLSYKYYgLNEAFGAIMGEEKDLERFQTSFYAKNLIDAYAFFKEKisdtpmetlekmfdVLtKKMLFSVAELN--DNRIDPFSSFETIN 192
                 333333333333333333333444445556667777889999***********999999999998865433555566666665..8999********** PP

      DUF262 183 srGvpLsaadllkall 198
                 +rG+ Ls+ +l+k++l
  VIMSS27808 193 NRGKDLSTLELFKNRL 208
                 **************97 PP



Or compare VIMSS27808 to CDD or PaperBLAST