PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS27808 to PF03235 (DUF262)

VIMSS27808 has 217 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-34  103.7   2.1    1.5e-33  102.9   2.1    1.3  1  VIMSS27808  


Domain annotation for each sequence (and alignments):
>> VIMSS27808  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   2.1   1.5e-33   1.5e-33      11     220 ..      13     208 ..       5     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 1.5e-33
      DUF262  11 g.lriPdfQRpyvWeeeqieeLiedlla.....lrgyplGsivlw.skaadsageleviDGQQRltTltlllaatkeesekriknleaeiekekeeede 102
                 g ++iP++QR+y+W+ +q++++++dl++     ++ +++ s+ l   +++ +++ +e+iDGQQRl T+ +ll              +a           
  VIMSS27808  13 GvFEIPSYQRGYAWQVRQWKDFWNDLEHvsklgNKFHYMHSLTLRgLENELEDSAFEIIDGQQRLATSLILLGL------------LA----------- 88 
                 3499**********************99****************65444445******************9888............22........... PP

      DUF262 103 drlkrreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksa.......llsalkeklslieielededded 194
                 + +k++ ++++   l+  +++++  l+e++ +      ++kdl++ +++ + knli+ay ++ke++++        +++ l +k+ + + el   d+  
  VIMSS27808  89 KTTKHKDPKYNSMNLEPVLSYKYYGLNEAFGAIM---GEEKDLERFQTSFYAKNLIDAYAFFKEKISDTpmetlekMFDVLTKKMLFSVAELN--DNRI 182
                 2233334444444444455555444444333333...34566677789****************99999999866655555555555555555..8999 PP

      DUF262 195 qayeiFerlNsrGvpLtasellkall 220
                 + +  Fe++N+rG+ L++ el+k++l
  VIMSS27808 183 DPFSSFETINNRGKDLSTLELFKNRL 208
                 9***********************97 PP



Or compare VIMSS27808 to CDD or PaperBLAST