VIMSS45872 has 971 amino acids
Query: DUF262 [M=221]
Accession: PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-35 109.9 15.4 1.1e-35 109.9 15.4 6.6 5 VIMSS45872
Domain annotation for each sequence (and alignments):
>> VIMSS45872
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -25.0 33.4 1 1 119 124 .. 149 154 .. 10 302 .. 0.54
2 ! 109.9 15.4 1.1e-35 1.1e-35 5 220 .. 312 526 .. 307 527 .. 0.82
3 ? -8.4 17.4 1 1 91 172 .. 541 661 .. 529 695 .. 0.55
4 ? -7.3 10.1 1 1 117 172 .. 735 795 .. 686 856 .. 0.54
5 ? -4.7 11.3 1 1 81 136 .. 897 947 .. 797 967 .. 0.60
Alignments for each domain:
== domain 1 score: -25.0 bits; conditional E-value: 1
DUF262 119 klirse 124
+++ s
VIMSS45872 149 TIFLSL 154
111111 PP
== domain 2 score: 109.9 bits; conditional E-value: 1.1e-35
DUF262 5 lskskrglriPdfQRpyvWeeeqieeLiedlla......lrgyplGsivlwskaadsageleviDGQQRltTltlllaatkeesekriknleaeiekek 97
+++++++ iP fQR+yvW+ ++ie+L+ed+++ +++++lGsi+ + ++++s ++ ++iDGQQRltTl+l+ +a + i+ ++
VIMSS45872 312 NKNETIKMSIPVFQRNYVWTIDNIEKLLEDINDisnkqnNENHFLGSIISVLVKEESIDNIQIIDGQQRLTTLFLITKA-------------FIIFLYN 397
44445558***********************99******************999999*********************9.............4444455 PP
DUF262 98 eeededrlkrreresdkellqklirseklslee.keelselnsltkkdlakeekrneeknlikayevikeilksa.........llsalkeklslieie 186
+ e+ ++++ ++ ++ +l + +++ e + ++ + ++++ k++l+++e +n+++ ++ +++ i e+++++ +++al+++l l ++
VIMSS45872 398 NREEITKFTNEQIKQLSHLKDIFFNREFIIDRFsRIGGNPDYEALKQILSNDELDNKNNHIFMNLKDIVEWFEEKpkefkewanFANALFNNLILNLVI 496
555555555555556666666666666665555555556666777788899999********************9********9999998888888888 PP
DUF262 187 lededdedqayeiFerlNsrGvpLtasellkall 220
l++ d+ ++ Fe+lN++ ++L+a ellk+++
VIMSS45872 497 LKNVDE----FKTFESLNTNAKKLNAIELLKNKF 526
887666....**********************98 PP
== domain 3 score: -8.4 bits; conditional E-value: 1
DUF262 91 aeiek.........ekeeededrlkrreresdkellqklirseklsleekeelselnsltkkdl...........akeekrneeknlikayevikeilk 169
+e+++ +++++de+ ++++++++ + l+ l+ ++ + l+ + + +k+d ++k ++++n ++ ++++ ++++
VIMSS45872 541 EEFQQkyndlitkkFLLKKDENIIEVKRFNEFVDSLSALNLCKDEDLKR------FEKNDKDDEyynkswffiieIINKKFTLKNNWKACLKYFSKYID 633
2222233222223555555555555555555555555555555444433......33222222233444688899888899999999999999999888 PP
DUF262 170 sa.........................l 172
+ l
VIMSS45872 634 IYndltikdkftnnncnfylisdylliL 661
8877776555555555555444444431 PP
== domain 4 score: -7.3 bits; conditional E-value: 1
DUF262 117 lqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksa.........l 172
l kli+++ ++++ + ++ s+++ d+ ++ +++ ik+++ +++++ ++ l
VIMSS45872 735 LIKLIDNDINKNNINSIKNINLSKKFLDV----FNSNNQMEIKNIKNFYNKMLDEkvsdihlayL 795
33334444333333333333333333333....23333334444444444444334544543331 PP
== domain 5 score: -4.7 bits; conditional E-value: 1
DUF262 81 esekriknleaeiekekeeededrlkrreresdkellqklirseklsleekeelse 136
+e++i +l++e++k ++++lk+++ + +++ +++ + s kls++e+ + ++
VIMSS45872 897 LNEEQITKLYNEFTK-----INEKLKSNKIDVNEDVFKEALMSLKLSDKEELQPEQ 947
334444444444443.....334555555555555555555555555555444444 PP
Or compare VIMSS45872 to CDD or PaperBLAST