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Align VIMSS55555 to PF03235 (DUF262)

VIMSS55555 has 638 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   60.8   1.5    1.1e-20   60.8   1.5    3.8  3  VIMSS55555  


Domain annotation for each sequence (and alignments):
>> VIMSS55555  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.3      0.11      0.11     155     204 ..     130     186 ..      27     218 .. 0.56
   2 !   60.8   1.5   1.1e-20   1.1e-20      13     220 ..     270     411 ..     259     412 .. 0.86
   3 ?   -0.4   0.2     0.062     0.062     121     171 ..     498     544 ..     456     599 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
      DUF262 155 knlikayevikeilksa.......llsalkeklslieielededdedqayeiFerlN 204
                 + ++++++  +++  s+           lk+kl+ i+  +  e+d d++++i e++ 
  VIMSS55555 130 REIKRKIDRYRDFDVSQfyelhreQTIQLKHKLDSIFTKYPGESDVDAVKDIIEKIQ 186
                 111111111111111111111111111111333444444444455555555555444 PP

  == domain 2  score: 60.8 bits;  conditional E-value: 1.1e-20
      DUF262  13 riPdfQRpyv.WeeeqieeLiedllalrgyplGsivlw....skaads.ageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrl 105
                  +P++QR+ + W  +++ +Lie++  l+g pl+ +++     ++a+++ +  + viDG QR+tTl+ +  +                            
  VIMSS55555 270 LTPEYQRKDRiWPIKDRARLIESI--LLGLPLPVFYFAeranKDAESEvDFDWVVIDGLQRTTTLVDFVQG---------------------------- 338
                 89*******99*************..************99965555558**********************............................ PP

      DUF262 106 krreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksallsalkeklslieielededdedqayeiFerlN 204
                                    k++l+++++l ++++ ++kdl+++e+r+ +++ i  + +  +                        d+e+ + e+F r+N
  VIMSS55555 339 -------------------KFALKDLNQLPKYDNCYFKDLPRKEQRKIREYQIHGHLIQVS-----------------------NDSEEMIRELFHRIN 395
                 ...................6777777788888899*****888888887777777666655.......................388999********* PP

      DUF262 205 srGvpLtasellkall 220
                 + G+ L+ +e++ al+
  VIMSS55555 396 TYGKNLSYQEIRSALY 411
                 ************9987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.062
      DUF262 121 irseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksa 171
                 i+++  + ++ ++      ++ + ++ke+k +++k l+++++ i+ +++++
  VIMSS55555 498 IDYKLKESLKTISVI----FEDDAFKKEPKGKLNKILFELLVSIFAMMSDE 544
                 222222222211111....11122244445555555555555555544444 PP



Or compare VIMSS55555 to CDD or PaperBLAST