VIMSS55555 has 638 amino acids
Query: DUF262 [M=221] Accession: PF03235.14 Description: Protein of unknown function DUF262 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-20 60.6 1.5 1.4e-20 60.6 1.5 3.8 3 VIMSS55555 Domain annotation for each sequence (and alignments): >> VIMSS55555 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 2.0 0.098 0.098 152 207 .. 127 189 .. 55 213 .. 0.52 2 ! 60.6 1.5 1.4e-20 1.4e-20 13 220 .. 270 411 .. 260 412 .. 0.86 3 ? -0.4 0.2 0.06 0.06 118 171 .. 495 544 .. 455 598 .. 0.53 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.098 DUF262 152 neeknlikayevieeilksa.......llsalktklslieieleseddedqayeiFerlNsrG 207 e + ++++++ +++ s+ lk+kl+ i+ + e+d d++++i e++ + VIMSS55555 127 SETREIKRKIDRYRDFDVSQfyelhreQTIQLKHKLDSIFTKYPGESDVDAVKDIIEKIQELE 189 111111111111111111111111211111112334444445555566666666665554444 PP == domain 2 score: 60.6 bits; conditional E-value: 1.4e-20 DUF262 13 riPdfQRpyv.WeeeqveeLiedllalkgyplGsivlw....skaads.ageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrl 105 +P++QR+ + W + + +Lie++ l+g pl+ +++ ++a+++ + + viDG QR+tTl+ ++ + VIMSS55555 270 LTPEYQRKDRiWPIKDRARLIESI--LLGLPLPVFYFAeranKDAESEvDFDWVVIDGLQRTTTLVDFVQG---------------------------- 338 79*******99*************..************99865555558**********************............................ PP DUF262 106 krreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksallsalktklslieieleseddedqayeiFerlN 204 k++l+++++l + + ++kdl+++e+r+ +++ i + + + d+e+ + e+F r+N VIMSS55555 339 -------------------KFALKDLNQLPKYDNCYFKDLPRKEQRKIREYQIHGHLIQVS-----------------------NDSEEMIRELFHRIN 395 ...................67777777888888999****888888877777777666654.......................388999********* PP DUF262 205 srGvpLtasellkall 220 + G+ L+ +e++ al+ VIMSS55555 396 TYGKNLSYQEIRSALY 411 ************9987 PP == domain 3 score: -0.4 bits; conditional E-value: 0.06 DUF262 118 qkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksa 171 ++++++ + ++ ++ + + + ++ke+k +++k l+++++ i+ +++++ VIMSS55555 495 FQIIDYKLKESLKTISVIF----EDDAFKKEPKGKLNKILFELLVSIFAMMSDE 544 3333333222222111111....1122244444555555555555555444443 PP
Or compare VIMSS55555 to CDD or PaperBLAST