VIMSS55555 has 638 amino acids
Query: DUF262 [M=221]
Accession: PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-20 60.8 1.5 1.1e-20 60.8 1.5 3.8 3 VIMSS55555
Domain annotation for each sequence (and alignments):
>> VIMSS55555
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.3 2.3 0.11 0.11 155 204 .. 130 186 .. 27 218 .. 0.56
2 ! 60.8 1.5 1.1e-20 1.1e-20 13 220 .. 270 411 .. 259 412 .. 0.86
3 ? -0.4 0.2 0.062 0.062 121 171 .. 498 544 .. 456 599 .. 0.52
Alignments for each domain:
== domain 1 score: -1.3 bits; conditional E-value: 0.11
DUF262 155 knlikayevikeilksa.......llsalkeklslieielededdedqayeiFerlN 204
+ ++++++ +++ s+ lk+kl+ i+ + e+d d++++i e++
VIMSS55555 130 REIKRKIDRYRDFDVSQfyelhreQTIQLKHKLDSIFTKYPGESDVDAVKDIIEKIQ 186
111111111111111111111111111111333444444444455555555555444 PP
== domain 2 score: 60.8 bits; conditional E-value: 1.1e-20
DUF262 13 riPdfQRpyv.WeeeqieeLiedllalrgyplGsivlw....skaads.ageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrl 105
+P++QR+ + W +++ +Lie++ l+g pl+ +++ ++a+++ + + viDG QR+tTl+ + +
VIMSS55555 270 LTPEYQRKDRiWPIKDRARLIESI--LLGLPLPVFYFAeranKDAESEvDFDWVVIDGLQRTTTLVDFVQG---------------------------- 338
89*******99*************..************99965555558**********************............................ PP
DUF262 106 krreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksallsalkeklslieielededdedqayeiFerlN 204
k++l+++++l ++++ ++kdl+++e+r+ +++ i + + + d+e+ + e+F r+N
VIMSS55555 339 -------------------KFALKDLNQLPKYDNCYFKDLPRKEQRKIREYQIHGHLIQVS-----------------------NDSEEMIRELFHRIN 395
...................6777777788888899*****888888887777777666655.......................388999********* PP
DUF262 205 srGvpLtasellkall 220
+ G+ L+ +e++ al+
VIMSS55555 396 TYGKNLSYQEIRSALY 411
************9987 PP
== domain 3 score: -0.4 bits; conditional E-value: 0.062
DUF262 121 irseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksa 171
i+++ + ++ ++ ++ + ++ke+k +++k l+++++ i+ +++++
VIMSS55555 498 IDYKLKESLKTISVI----FEDDAFKKEPKGKLNKILFELLVSIFAMMSDE 544
222222222211111....11122244445555555555555555544444 PP
Or compare VIMSS55555 to CDD or PaperBLAST