PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS76758 to PF03235 (DUF262)

VIMSS76758 has 452 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-15   41.7   0.6      8e-15   41.7   0.6    2.6  2  VIMSS76758  


Domain annotation for each sequence (and alignments):
>> VIMSS76758  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.6     8e-15     8e-15     140     221 .]      36     121 ..       5     121 .. 0.77
   2 ?   -1.0   2.1     0.089     0.089     161     161 ..     284     284 ..     125     422 .. 0.58

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 8e-15
      DUF262 140 ltkkdlakeekrneeknlikayevikeilksa.......llsalkeklslieielededdedqayeiFerlNsrGvpLtasellkalll 221
                 ++ kd+++e+ +++e  +i++ e+i+++l +        l++++ +++++++++++d ++    +++F++lNsrG+pL++++llk+ l+
  VIMSS76758  36 QDSKDYKPEKPSDTELVFISNAETIRDYLLRLsvdelklLAKYILQNVYIVFVQTDDFAS---SFRLFNVLNSRGLPLSNADLLKNALF 121
                 223444777889***************999999998888888888999999999988888...***********************986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.089
      DUF262 161 y 161
                 +
  VIMSS76758 284 L 284
                 0 PP



Or compare VIMSS76758 to CDD or PaperBLAST