PaperBLAST – Find papers about a protein or its homologs

 

Align WP_000648454.1 to PF03235 (DUF262)

WP_000648454.1 has 682 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.17
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-35  107.5   2.8    5.9e-35  107.5   2.8    2.8  3  WP_000648454.1  


Domain annotation for each sequence (and alignments):
>> WP_000648454.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   2.8   5.9e-35   5.9e-35      10     220 ..      17     217 ..       5     218 .. 0.76
   2 ?   -1.5   0.1      0.13      0.13     150     150 ..     333     333 ..     236     457 .. 0.56
   3 ?   -1.9   1.8      0.17      0.17     150     150 ..     540     540 ..     385     625 .. 0.60

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 5.9e-35
          DUF262  10 rglriPdfQRpyvWeeeqieeLiedlla....lrgyplGsivlw......skaads...ageleviDGQQRltTltlllaatkeesekriknlea 91 
                     + + iP +QR+y W ee++e+L++d++     ++ +++Gsi         + +  s    +e+ +iDGQQR+tTl+lll+a   e +   + +++
  WP_000648454.1  17 TIFSIPVYQRNYTWAEENCEKLLQDIVSisqnKKTHFMGSITYIlhliddE-K--SlrqLQEFVIIDGQQRITTLMLLLKA--IETKIPNEGIKK 106
                     3389**************************************99*998632.2..22469*********************..222222222333 PP

          DUF262  92 eiekekeeededrlkrreresdkellqklirseklsleekeelselnsltkkdlakeekrneeknlikayevikeilksa.........llsalk 177
                     ei  ++++   +rl++++ +sdke ++  +++++ +l+                         + ++++y++++++l+++          + a+ 
  WP_000648454.1 107 EIG-NLLNLSGQRLRLKPIKSDKEAFDLVMQNRSHELQG-----------------------VSHIRDNYKFFTKELENYiskgyrieeIYGAF- 176
                     333.5667888999999***************9987655.......................45555555555555555554444433323333. PP

          DUF262 178 eklslieielededdedqayeiFerlNsrGvpLtasellkall 220
                       l+++ i le    ed+ + +Fe++N++Gv+L+  +l++++l
  WP_000648454.1 177 LRLKIVAIGLE--LGEDDPQVVFESINATGVQLKGLDLIRNYL 217
                     67889999999..56678***********************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.13
          DUF262 150 k 150
                     +
  WP_000648454.1 333 F 333
                     0 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.17
          DUF262 150 k 150
                     +
  WP_000648454.1 540 R 540
                     1 PP



Or compare WP_000648454.1 to CDD or PaperBLAST