NP_001143742.2 has 382 amino acids
Query: DUF295 [M=259] Accession: PF03478.22 Description: Domain of unknown function (DUF295) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-39 122.7 0.0 1.8e-39 122.0 0.0 1.3 1 NP_001143742.2 Domain annotation for each sequence (and alignments): >> NP_001143742.2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 122.0 0.0 1.8e-39 1.8e-39 1 250 [. 52 331 .. 52 351 .. 0.75 Alignments for each domain: == domain 1 score: 122.0 bits; conditional E-value: 1.8e-39 DUF295 1 lPwlllpddeeedsstlfs.lpdgklyrrlklPegrrrcvgssg.gwLltaderssnlfllnpltgarieLPplst..lpve.....ellirkvv 86 lP l+lp+++ s +++ l+ + ++ lP r ++gs++ gw+++a ++++ +l+n tg eLP + + + ++++ + NP_001143742.2 52 LPSLFLPPAN---VSGVYCyLSG-CRDHN-MLPGPR--YFGSYDgGWFFLAYGQTRGHRLFNIRTGGSHELPDVVAdlF--TtvgtySMVVLAAT 137 6888888863...4554442444.21224.478875..9*****9****9988777899*************8832223..24445555666666 PP DUF295 87 lsasps.sdyvvvlisges.......ggklafcrsgds..sWttieee....gegyedvvfhkgkfYaltntgevvvldl.........gsdepl 158 ls +p +v++ i + ++++af+r+gd+ +++++e g + edvv+++ fY+lt++g++ v g NP_001143742.2 138 LSLPPDhLACVAAGIVTYQpdldaprRRHVAFWRPGDKmaVCNVVPNEsvgpGLEPEDVVYYRDSFYFLTQDGHILVSRPyynrvgdilG----- 227 666675677777777666678*****99********9963355555559*9844568********************9976665433321..... PP DUF295 159 evs.....evvks............kerkylVessGelllVrrylkkeskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdfp 236 + + + +ylV+s+Gell+V+r ++++ t++f+V+++ l ++ w e + L +r+lF+g+++s s ++s++p NP_001143742.2 228 --AlskltR---FqfqeggcsdeqfVRARYLVSSRGELLMVVRLAAHHHAPTSSFKVFRMTLY-PRTWFEEDALCGRMLFVGRGCSRSYEVSQYP 316 ..1222330...13444666655554478*****************9999***********98.679**************************** PP DUF295 237 glkgNcIYftddk..k 250 g+k I+f+dd+ + NP_001143742.2 317 GFKD-GIFFLDDRsfY 331 **96.8*****98431 PP
Or compare NP_001143742.2 to CDD or PaperBLAST