PaperBLAST – Find papers about a protein or its homologs

 

Align XP_018846321.2 to PF03478 (DUF295)

XP_018846321.2 has 469 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-12   33.2   0.1    3.4e-12   32.6   0.1    1.3  1  XP_018846321.2  


Domain annotation for each sequence (and alignments):
>> XP_018846321.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   3.4e-12   3.4e-12       2     215 ..     171     392 ..     170     443 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.4e-12
          DUF295   2 Pwlllpddeeedsstlfslpdgklyr.rl.klPeg...rrrcvgssggwLltaderssnlfllnpltgarieLPplstlpveellirkvvlsasp 91 
                     Pw    ++e+ +s ++++ + +k ++ ++ +lP++       v+s gg +++ d +++n++++nplt++  eLP+ s ++v++ +   + l  + 
  XP_018846321.2 171 PWFYTITHENVNSGAMYDPSLKKWLHpTIsSLPNKiiiL--PVASAGGLVCFLDIGHRNFYICNPLTQSFKELPARS-VKVWSRVAVGMTLNGNS 262
                     777754545556677999777888887334899999643..79***********88899***************775.33222233333364444 PP

          DUF295  92 s.sdyvvvlisgesggklafcrsgdssWttieee.........gegy.edvvfhkgkfYaltn.tgevvvldl..gsdeplevsevvks...ker 169
                     + + y  +++    +g++ ++ s ++sW++  ++           ++ +++v  +g +Y++++  + +v +d+  g    +  + ++ +    ++
  XP_018846321.2 263 TtGGYKILWVGC--NGEFEVYDSVKNSWIRPGNMpsyiklplsL-NFrSQAVSIDGTLYFMRSdPEGIVSYDMvtG--VWK--QYIIPAplhLTD 350
                     469******998..469999999999998866668899998853.563688888******9994458999998532..222..233333653237 PP

          DUF295 170 kylVessGelllVrrylkkeskrtvefeVykldleeeakweevesL 215
                     + l+e  G+ +lV   +k++    + +e+ k+ l     w+ev+ +
  XP_018846321.2 351 HTLAEYGGQIMLVGLLTKNAATCVCIWELQKMTL----LWKEVDRM 392
                     89***********977666555556666666655....48777665 PP



Or compare XP_018846321.2 to CDD or PaperBLAST