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Align SwissProt::Q9FIR1 to PF03479 (PCC)

SwissProt::Q9FIR1 has 386 amino acids

Query:       PCC  [M=117]
Accession:   PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
      2e-26   78.9   1.9    3.1e-26   78.3   1.9    1.3  1  SwissProt::Q9FIR1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9FIR1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   1.9   3.1e-26   3.1e-26       2     116 ..     182     296 ..     181     297 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 3.1e-26
                PCC   2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisp.........tdgepflHlhv 84 
                        ++v+++++Gedi++++++f+++   r++c+lsa+Gavs++ l+ ++   ++    +++g+fEi++lsG++++         +       l+v
  SwissProt::Q9FIR1 182 PHVIEVNTGEDIASKVMAFSDQG-SRTICILSASGAVSRVMLRQAS---HSSGIVTYEGRFEIITLSGSVLNyevngstnrS-----GNLSV 264
                        8**********************.*****************66555...444569999**************9987765533.....56*** PP

                PCC  85 sladedgqvvgGhlveglvaattvevviaefe 116
                        +la++dg +vgG +v  lvaat v+v++++f 
  SwissProt::Q9FIR1 265 ALAGPDGGIVGGSVVGNLVAATQVQVIVGSFV 296
                        ***************66************995 PP



Or compare SwissProt::Q9FIR1 to CDD or PaperBLAST