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Align VIMSS10100620 to PF03479 (PCC)

VIMSS10100620 has 339 amino acids

Query:       PCC  [M=117]
Accession:   PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-27   80.2   0.0    1.2e-26   79.6   0.0    1.3  1  VIMSS10100620  


Domain annotation for each sequence (and alignments):
>> VIMSS10100620  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.2e-26   1.2e-26       1     116 [.     146     259 ..     146     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.2e-26
            PCC   1 rvfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisp......tdgepflHlhvsladed 90 
                    r++v+++ +G+di++++++far++  r++cv+s++G+v+n+t++    +  +    +l g+fEilslsG+++p        g     l+v+la+ +
  VIMSS10100620 146 RTHVMEIGDGCDIVDCMATFARRR-QRGVCVMSGTGSVTNVTIRQPGSPPGS--VVSLHGRFEILSLSGSFLPppappaATG-----LSVYLAGGQ 233
                    79**********************.*****************6666655555..78888**************776666445.....********* PP

            PCC  91 gqvvgGhlveg.lvaattvevviaefe 116
                    gqvvgG +v g l  +++v v++a+f+
  VIMSS10100620 234 GQVVGGSVV-GpLLCSGPVVVMAASFS 259
                    *********.77999*********997 PP



Or compare VIMSS10100620 to CDD or PaperBLAST