VIMSS10100624 has 356 amino acids
Query: PCC [M=117]
Accession: PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.9e-30 89.7 0.1 1.3e-29 89.1 0.1 1.3 1 VIMSS10100624
Domain annotation for each sequence (and alignments):
>> VIMSS10100624
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.1 0.1 1.3e-29 1.3e-29 2 115 .. 172 285 .. 171 287 .. 0.92
Alignments for each domain:
== domain 1 score: 89.1 bits; conditional E-value: 1.3e-29
PCC 2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisp.........tdgepflHlhvslad 88
++++++++Ged+ ++ +f+++ +r++cvlsa+G +s++tl+ +++++ + +++g+fEilslsG+++p t+g ++vsla
VIMSS10100624 172 PHIITVNTGEDVTMKIISFSQQG-PRSICVLSANGVISSVTLR---QPDSSGGTLTYEGRFEILSLSGSFMPndsggtrsrTGG-----MSVSLAS 258
8**********************.*****************55...555555569*****************998888888878.....******* PP
PCC 89 edgqvvgGhlveg.lvaattvevviaef 115
+dg+vvgG l+ g lvaa++v+vv+++f
VIMSS10100624 259 PDGRVVGGGLA-GlLVAASPVQVVVGSF 285
***********.77************98 PP
Or compare VIMSS10100624 to CDD or PaperBLAST