PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1206150 to PF03479 (PCC)

VIMSS1206150 has 202 amino acids

Query:       PCC  [M=117]
Accession:   PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-25   73.8   0.0    1.1e-24   73.2   0.0    1.3  1  VIMSS1206150  


Domain annotation for each sequence (and alignments):
>> VIMSS1206150  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.1e-24   1.1e-24       1     116 [.       2     108 ..       2     109 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.1e-24
           PCC   1 rvfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisptdgepflHlhvsladedgqvvgGh 97 
                   r+  l+l+pG+d+ +slee+++++gi++ ++  ++G +s+a ++   ++e +     l+g++E+++l+Gti+p +g   +Hlh sl+d  +qv+gGh
  VIMSS1206150   2 RPLPLKLAPGSDLRNSLEELSQTQGIHGFVL-GVVGNLSRAAFQCPGQPEPT----VLEGDLEVITLNGTIAP-EG---VHLHLSLSDGACQVWGGH 89 
                   67789*******************9987776.**********9999999998....899**************.89...****************** PP

           PCC  98 lveglvaattvevviaefe 116
                   l +g+ +   v + ++ ++
  VIMSS1206150  90 LEPGTLVQKGVDLLVGVLD 108
                   ****888999998888765 PP



Or compare VIMSS1206150 to CDD or PaperBLAST