VIMSS124362 has 285 amino acids
Query: PCC [M=117]
Accession: PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-19 56.0 0.0 7.2e-13 35.2 0.1 2.2 2 VIMSS124362
Domain annotation for each sequence (and alignments):
>> VIMSS124362
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.7 0.0 9e-08 9e-08 5 106 .. 28 136 .. 25 143 .. 0.80
2 ! 35.2 0.1 7.2e-13 7.2e-13 1 114 [. 178 284 .. 178 285 .] 0.92
Alignments for each domain:
== domain 1 score: 18.7 bits; conditional E-value: 9e-08
PCC 5 lrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeye.........ekellgpfEilslsGtisptdgepflHlhvsladedgqv 93
l+++pG +le++ e ++e g+++a++ Ga++ +v+ + ++ + + +g+ i l+ t+ + dgepflH h + edg
VIMSS124362 28 LTFKPGRSVLEAVHEALAETGCDSAMIEVRGGAFAPLA--YVTPTLSD-DgihaawysdIHAPDGRAPIEDLVMTFGRRDGEPFLHGHGVWRHEDGLR 122
6899***********************88888998888..44444333.3244656555444459999999999************************ PP
PCC 94 vgGhlveg.lvaat 106
+Gh++++ + a
VIMSS124362 123 AAGHVMPKdSQFAE 136
*****977565444 PP
== domain 2 score: 35.2 bits; conditional E-value: 7.2e-13
PCC 1 rvfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisptdge..pflHlhvsladedgqvvgG 96
r +++rl+p+e i+ ++e+ a+e+gi+ a++ ++iG++ +t ++dg+ e + E+l Gt+sp d + ++ l +++ d +++++ G
VIMSS124362 178 RAVLCRLKPNEPIHPAIERTAAEHGIERATL-HGIGSLVGCT--FADGQVME------SAASELLIRKGTLSP-DRSgqAKAKLDIAIVDTECTIFEG 265
56789**************************.**********..99999888......7799***********.4444599***************** PP
PCC 97 hlveg.lvaattvevviae 114
++ g ++ t ev i+e
VIMSS124362 266 EIAYGvDAVCITFEVLIVE 284
*****777899****9986 PP
Or compare VIMSS124362 to CDD or PaperBLAST