PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS667897 to PF03649 (UPF0014)

VIMSS667897 has 258 amino acids

Query:       UPF0014  [M=242]
Accession:   PF03649.17
Description: Uncharacterised protein family (UPF0014)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-68  216.2  18.7    2.6e-68  216.0  18.7    1.0  1  VIMSS667897  


Domain annotation for each sequence (and alignments):
>> VIMSS667897  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0  18.7   2.6e-68   2.6e-68       3     242 .]       5     241 ..       3     241 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.0 bits;  conditional E-value: 2.6e-68
      UPF0014   3 qlalalllvlialllslvlklglekelliaavravvQLllvGyvLklifalnnlllvllillvmiliAaieaakrvkkrlkgllkivllsllvstllv 100
                  +l+l++ll++i++++s++++l + k+l++a++ravvQL+++G++L++if++n+ +l +l+++v+i++A++++++r++  +++++ i++++++v+t+l 
  VIMSS667897   5 ALGLTALLLVIPIIISYKEGLHIIKDLIVATLRAVVQLIILGFLLHYIFKINDKWLLVLCVFVIIVNASWNTISRSSPVMHHVFLISFVAIFVGTALP 102
                  7999*********************************************************************************************9 PP

      UPF0014 101 llllllliiqpepwyepqylIPiaGmilGnamnaislalerllselkeereeiealLalGatpkeAvaeilreavraaliPtinsmktvGlVsLPGmm 198
                  l+ +++   +++++++++ +IPi Gm++ n + ai+la+++l +++ +   +ie +L+l at k A++  +re++r a++Pti+s+kt GlVs+PGmm
  VIMSS667897 103 LVGTIA---TGAIQFTANEVIPIGGMLANNGLIAINLAYQNLDRAFVQDGTNIESKLSLAATTKLASKGAIRESIRLAIVPTIDSVKTYGLVSIPGMM 197
                  999999...889************************************************************************************** PP

      UPF0014 199 tGqiLaGaspleAvkyqilimfmilastaltsllvvllvyrrlf 242
                  tG+i++G+ pl+A+k+q+l++f+ +++t++++l++++l+y ++f
  VIMSS667897 198 TGLIIGGVPPLQAIKFQLLVVFIHTTATIMSALIATYLSYGQFF 241
                  ****************************************9998 PP



Or compare VIMSS667897 to CDD or PaperBLAST