PaperBLAST – Find papers about a protein or its homologs

 

Align WP_262454266.1 to PF03649 (UPF0014)

WP_262454266.1 has 250 amino acids

Query:       UPF0014  [M=242]
Accession:   PF03649.17
Description: Uncharacterised protein family (UPF0014)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-43  132.4  18.6    1.1e-42  132.2  18.6    1.0  1  WP_262454266.1  


Domain annotation for each sequence (and alignments):
>> WP_262454266.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2  18.6   1.1e-42   1.1e-42       5     239 ..      15     242 ..      11     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 1.1e-42
         UPF0014   5 alalllvlialllslvlklglekelliaavravvQLllvGyvLklifalnnlllvllillvmiliAaieaakrvkkrlkgllkivllsllvstll 99 
                     +l ++l+++a+++ ++   g   ++l+a +ra+vQL++v++v+ ++ +  + +++++++ +m+++A++++ +rv    +g ++++++ l+++ + 
  WP_262454266.1  15 ILLAALLVLAAAVWRLALEGSPAQMLVAGLRALVQLAAVALVIAFLAN--RGAWAFAFVGLMFVVAVWTSGHRV--APSGRWWMAAVPLAAGVVP 105
                     344444455555555555578899******************998866..6889999****************5..5678899************ PP

         UPF0014 100 vllllllliiqpepwyepqylIPiaGmilGnamnaislalerllselkeereeiealLalGatpkeAvaeilreavraaliPtinsmktvGlVsL 194
                     v++l++++ +    ++++  +I ++G  +G am++++l+++r+ +el+ +r e+ea++alG ++  A   + r    +a++P+i++++t+GlV+L
  WP_262454266.1 106 VAALMFAAGV---LPFNALAIIAVVGQQIGGAMSTVTLGGRRVRDELDVRRGEVEAAVALGFQWPAARLMVGRPVAGEAVLPSIDQTRTAGLVTL 197
                     ******9666...9********************************************************************************* PP

         UPF0014 195 PGmmtGqiLaGaspleAvkyqilimfmilastaltsllvvllvyr 239
                     PG+++G+iL+Ga+pl+A  +q+l+++ +l  ++ ++ ++++l++r
  WP_262454266.1 198 PGAFVGMILGGATPLDAGLIQLLVLISLLLVNSTAAAATLWLACR 242
                     *****************************************9987 PP



Or compare WP_262454266.1 to CDD or PaperBLAST