PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS958829 to PF03653 (UPF0093)

VIMSS958829 has 151 amino acids

Query:       UPF0093  [M=146]
Accession:   PF03653.17
Description: Uncharacterised protein family (UPF0093)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-54  168.2   3.0    8.5e-54  168.0   3.0    1.0  1  VIMSS958829  


Domain annotation for each sequence (and alignments):
>> VIMSS958829  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.0   3.0   8.5e-54   8.5e-54       2     146 .]       9     151 .]       8     151 .] 0.97

  Alignments for each domain:
  == domain 1  score: 168.0 bits;  conditional E-value: 8.5e-54
      UPF0093   2 aalylwvkalHiiavisWmAglfyLPRlfVyhaeakekseekellkimerrLlkvimnpamivtlvlGllllvlaeglvalssgWlhvKlllvlllli 99 
                   +ly+wvk+ H+i+vi+WmAglf LPR+++yh++++++s e+   + +e+rL ++i++p++i+++v+G lll+++ g++++  +W+hvKll+v++l++
  VIMSS958829   9 DNLYPWVKSAHVIFVIFWMAGLFTLPRYCIYHSQTTPGSVEDLKWQNRETRLRHIILTPSLILSWVFG-LLLAVHIGAFVI-GHWFHVKLLAVIILTA 104
                  589************************************88888888*********************.9*******9777.6*************** PP

      UPF0093 100 fhlvlakllkklergentksekfyrilNEvptlllivivllvvvkpf 146
                  +h++ ++++kkl++g +  se+ +r++NEvp +++ ++v+l+++kpf
  VIMSS958829 105 YHGWSVAYAKKLAKGFRPASERGLRLMNEVPGIIAAIAVILAIIKPF 151
                  *********************************************98 PP



Or compare VIMSS958829 to CDD or PaperBLAST