NP_013077.1 has 279 amino acids
Query: TMEM33_Pom33 [M=240]
Accession: PF03661.17
Description: Transmembrane protein 33/Nucleoporin POM33
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-26 79.7 17.0 8.9e-26 76.8 17.0 1.9 1 NP_013077.1
Domain annotation for each sequence (and alignments):
>> NP_013077.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 76.8 17.0 8.9e-26 8.9e-26 8 236 .. 20 262 .. 14 265 .. 0.79
Alignments for each domain:
== domain 1 score: 76.8 bits; conditional E-value: 8.9e-26
TMEM33_Pom33 8 slkqhv..vanklelalwlarlltvlftvlyilplflssesasaYykallanaatsalrLhqrl.pqv...qls.........reflqrllledsch 89
sl+q++ va+ l++a++ + +++++++ly+l +s + Y+ a l+ + ++ ++++q++ + q ++ ++ ll+ + +
NP_013077.1 20 SLVQRFmaVAKSLQFAWFTGHSVVLISSILYLLK--MS---EFYYRSAYLGVIESFGIIIYQQFfTRNeplQTQdaaatkasiKSRVAGLLKSEDVL 111
455543115789********************94..33...23455677888889999999976432211122111111111234567799****** PP
TMEM33_Pom33 90 yLlysliFlfsapvtlallPvalfallHaasytltlld.....llgsnslvvarllislvesqsqniLkliAlsEivlmplliv.llllgraslltp 180
yL+++ +lf + ++++l+P++ fa++H++ y++++l l ++ s+ + +++ ++v + + ++ + E++++ l+++ +l +++s + +
NP_013077.1 112 YLVLANFWLFTPRFSFSLIPFFAFAVFHVLIYVEKVLLpkvfhLSSKDSSKILSFIDKFVVQYNDLCMHWVGTAELLIFILVLFrAILCFQRSWIIL 208
*************************************999996556666677777788888888899*********88888776257889******* PP
TMEM33_Pom33 181 liYyqfLslRYsSrrnPytrnafselrilleklankpscPavirklieklislvsr 236
++Y+ f++lRY + y+++af++ r++++ ++++ps+P++++++++ + ++r
NP_013077.1 209 VVYAIFIKLRYE--NSKYMKAAFAQWRVRMDGIISHPSIPPFVKRAYNAIKMSLIR 262
************..********************************9987655555 PP
Or compare NP_013077.1 to CDD or PaperBLAST