PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001697758.1 to PF03665 (UPF0172)

XP_001697758.1 has 213 amino acids

Query:       UPF0172  [M=193]
Accession:   PF03665.16
Description: Uncharacterised protein family (UPF0172)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-57  181.1   0.0    1.4e-57  180.9   0.0    1.0  1  XP_001697758.1  


Domain annotation for each sequence (and alignments):
>> XP_001697758.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0   1.4e-57   1.4e-57       2     192 ..       5     199 ..       4     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 1.4e-57
         UPF0172   2 vevseqAYvKlllHaaKyptqaVnGvLlGkkssdkskkavevtDavPLfHssttlspmlevAlaqvesyakek.glvivGyYqanerlsdtelss 95 
                     ++ +++A +K+l+HaaKyp+++VnGvL+G+ ++ +s   ve+ Da+PL+H+++tl+p le++laqvesy++ + +++ivGyYq+ +r++  +l +
  XP_001697758.1   5 CSADQTALLKILAHAAKYPSNSVNGVLVGTAKEGGS---VEILDAIPLCHTTLTLAPALEIGLAQVESYTHITgSVAIVGYYQSDARFGPGDLPP 96 
                     78899**************************99996...******************************99863789****************** PP

         UPF0172  96 laekiadkiaenfsdavllvvdnkkles..eseeeallalykkdslgkwkkkkesseasekka....sakealsnlldkkkyeqlvDFddHLddi 184
                     l++kiadk++e++ +av+lv+dnk+le+  +++ +  ++l++kd +++wk+++    +   k+    + +e +  ++++ k+++l+DF++HLdd 
  XP_001697758.1  97 LGRKIADKVSEHQAQAVVLVLDNKRLEQfcKAQADNPFELFSKDGSKGWKRASADGGELALKNadwkKLREEFFVMFKQLKHRTLHDFEEHLDDA 191
                     ***************************9763333355599999999****9776655544444667788888888999***************** PP

         UPF0172 185 sldwlnqe 192
                      +dwln+ 
  XP_001697758.1 192 GKDWLNKG 199
                     ******85 PP



Or compare XP_001697758.1 to CDD or PaperBLAST