PaperBLAST – Find papers about a protein or its homologs

 

Align WP_139414796.1 to PF03690 (UPF0160)

WP_139414796.1 has 289 amino acids

Query:       UPF0160  [M=318]
Accession:   PF03690.17
Description: Uncharacterised protein family (UPF0160)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-50  156.9   0.0    1.1e-49  155.8   0.0    1.4  1  WP_139414796.1  


Domain annotation for each sequence (and alignments):
>> WP_139414796.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0   1.1e-49   1.1e-49       2     310 ..       7     275 ..       6     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 1.1e-49
         UPF0160   2 igTHsgsFhaDevlAvalLrllpeykdaeivRtrdpevlekcdivvDVggvydpekkryDHHqrefketfsekkktklSSaGLvykhfgkeiikk 96 
                     +gTH+gsFhaDev A+alL l +   + +ivRtr++e+l++c+ v+DVggvy pe+kr+DHHq  +        + + SSaG+v  +  ++ +  
  WP_139414796.1   7 VGTHDGSFHADEVTACALLILFDLVDEDKIVRTRNSEKLAECEYVCDVGGVYSPEQKRFDHHQVAY--------EGPWSSAGMVLDYLKEQRLID 93 
                     89*************************************************************993........3478******99998888777 PP

         UPF0160  97 llklkvdeeevellyeklyeefieaiDaiDnGisvydeevepkykikt.tlssrvsrlnpswneeeseedederFekAselvgeeflekvkkyak 190
                     l             y+ l +++i+ iD  DnG    +        +   ++s++++ +np    ee +++ d+ F  +++++ + +l+++++  +
  WP_139414796.1  94 L--E---------EYHFLNHTLIHGIDEQDNGRFFSK--------EGFcSFSDIIKIYNP----EEGRNASDADFFFSLKFTID-LLKRLRNKFR 164
                     7..1.........2778999************98333........233499*********....5789999**********988.6677777799 PP

         UPF0160 191 swlpareivkealekrkevdesgrilvleqsvpwkehllelekelkiekeilyvlyedeskkwrvqavpvse.esfesrkpLpeewrGlrdeeLs 284
                          r++v++a+ek      ++  l +++ + w+e+++ l  e++    + +v ++ + ++w ++ +p +   ++e r+p+pe+w+Gl ++eL+
  WP_139414796.1 165 YDRMCRDVVRSAMEK------DEFCLFFDRPLAWQENFFFLGGEQH---PAAFVCFP-ACDQWILRGIPPTLdRRMEVRVPFPESWAGLLGKELE 249
                     999999999999999......6899**************9998777...89*****8.9*********99873789******************* PP

         UPF0160 285 evsgiegavFvhasgFiggaktkega 310
                     e+sgi+ga+F+h+  F+++ ++ke +
  WP_139414796.1 250 EISGIPGAIFCHKGLFLSVWDSKEHC 275
                     *****************999999875 PP



Or compare WP_139414796.1 to CDD or PaperBLAST