VIMSS2004312 has 285 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.6e-21 60.5 45.1 4.1e-16 45.3 19.6 3.1 3 VIMSS2004312
Domain annotation for each sequence (and alignments):
>> VIMSS2004312
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.3 19.6 4.1e-16 4.1e-16 1 72 [. 115 186 .. 115 187 .. 0.98
2 ! 16.0 6.5 5.9e-07 5.9e-07 21 73 .] 197 244 .. 190 244 .. 0.83
3 ! 21.1 9.5 1.5e-08 1.5e-08 2 52 .. 231 281 .. 230 284 .. 0.91
Alignments for each domain:
== domain 1 score: 45.3 bits; conditional E-value: 4.1e-16
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
+lG+ +i+lGi++liwPg++l + ++ +G+++++sG++++v+a+ + gg ++l++l+G+l ++G+++l
VIMSS2004312 115 VLGVMAIVLGIALLIWPGVTLKIAAVALGAYFVISGVIRIVTAIVELGLPGGWRVLDILVGLLLTVGGVVML 186
68**************************************************999***************98 PP
== domain 2 score: 16.0 bits; conditional E-value: 5.9e-07
DUF308 21 llalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
++++++++G+ +++ G++ lv ++ + + + ++ ++++i+aG+++lf
VIMSS2004312 197 AVLVTMVVGLGWMMEGVMALVESW-----HMPSSAWAVIYALISIVAGCIMLF 244
567889**************9666.....3344457999************98 PP
== domain 3 score: 21.1 bits; conditional E-value: 1.5e-08
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegg 52
++++i++G ++l+ P+a++ +l+++ G l++ Giv +v af++ k +++
VIMSS2004312 231 YALISIVAGCIMLFSPLASTGWLILFGGCALVALGIVAIVRAFTFGKVGKS 281
689****************************************88776554 PP
Or compare VIMSS2004312 to CDD or PaperBLAST