VIMSS318198 has 205 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-26 79.3 40.0 1.9e-17 49.6 17.7 3.2 3 VIMSS318198
Domain annotation for each sequence (and alignments):
>> VIMSS318198
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.6 17.7 1.9e-17 1.9e-17 2 72 .. 42 110 .. 41 111 .. 0.90
2 ! 41.5 14.1 6.6e-15 6.6e-15 1 72 [. 97 166 .. 97 167 .. 0.93
3 ! 10.0 1.2 4.5e-05 4.5e-05 12 50 .. 165 203 .. 164 205 .] 0.92
Alignments for each domain:
== domain 1 score: 49.6 bits; conditional E-value: 1.9e-17
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
lG++++++G++al ++a++a+vi++G++++v+G++++++af++++ +g+ ++ l +G+ly++aG+l +
VIMSS318198 42 LGVVYLVAGFVALGSMVMATVASVIVVGAMMIVAGVTEIIGAFQMKS-WGKFLIWAL-LGVLYVVAGFLTF 110
8******************************************8888.555555555.9********9976 PP
== domain 2 score: 41.5 bits; conditional E-value: 6.6e-15
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
llG+l++++G+l + +P++a+++l++++G+ ll+sG+v+l+ af++++++ + ++ ls+++ +++Gll+l
VIMSS318198 97 LLGVLYVVAGFLTFENPLFAAVLLTLFLGASLLASGAVRLFLAFSMKRESPW--VWVALSAVITLLLGLLIL 166
68******************************************88886665..47888***********98 PP
== domain 3 score: 10.0 bits; conditional E-value: 4.5e-05
DUF308 12 laliwPgaallalviliGvlllvsGivqlvaafaarkke 50
++ wP+ ++ +l +++G+ l+++G+ + +f++r+++
VIMSS318198 165 ILARWPVNSVYILGLFLGIDLIMAGAGWVSLGFSLRRRH 203
7888*****************************999976 PP
Or compare VIMSS318198 to CDD or PaperBLAST