VIMSS33397 has 195 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-28 83.6 60.2 4.5e-16 45.2 20.8 3.0 3 VIMSS33397
Domain annotation for each sequence (and alignments):
>> VIMSS33397
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.2 20.8 4.5e-16 4.5e-16 2 72 .. 30 99 .. 29 100 .. 0.93
2 ! 30.8 15.7 1.5e-11 1.5e-11 1 72 [. 86 155 .. 86 156 .. 0.90
3 ! 33.1 7.8 2.7e-12 2.7e-12 2 50 .. 143 191 .. 142 194 .. 0.94
Alignments for each domain:
== domain 1 score: 45.2 bits; conditional E-value: 4.5e-16
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
+Gil++ilG+l+l+wPg+++l+ ++ +Gv+ll+ G++q++ af + + + gg++ll++sG+ ++i+++l++
VIMSS33397 30 SGILSLILGVLVLAWPGISILVAAMAFGVYLLITGVAQVAFAF-SLHVSAGGRILLFISGAASLILAVLAF 99
7******************************************.55567778999*************987 PP
== domain 2 score: 30.8 bits; conditional E-value: 1.5e-11
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
++G +++il++la+ + g a+l+l+i+iG+ +++ G++ v+a++ g + +++++G++++iaG++++
VIMSS33397 86 ISGAASLILAVLAFRHFGDAVLLLAIWIGIGFIFRGVATTVSAISDPMLPG--RGWSIFVGVISLIAGIVVM 155
6899****************************************5555444..458*************997 PP
== domain 3 score: 33.1 bits; conditional E-value: 2.7e-12
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkke 50
+G++++i+Gi++++ P+ ++ +l++++G++l+v G +++++fa rk +
VIMSS33397 143 VGVISLIAGIVVMASPFESIWILALVVGIWLVVIGTCEIASSFAIRKAS 191
8******************************************999865 PP
Or compare VIMSS33397 to CDD or PaperBLAST