VIMSS668128 has 170 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-24 72.7 61.7 1.1e-16 47.1 11.6 3.1 3 VIMSS668128
Domain annotation for each sequence (and alignments):
>> VIMSS668128
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.1 11.6 1.1e-16 1.1e-16 1 73 [] 14 86 .. 14 86 .. 0.98
2 ! 32.6 21.6 3.9e-12 3.9e-12 2 73 .] 73 140 .. 72 140 .. 0.91
3 ! 18.1 12.6 1.3e-07 1.3e-07 5 44 .. 130 169 .. 128 170 .] 0.95
Alignments for each domain:
== domain 1 score: 47.1 bits; conditional E-value: 1.1e-16
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
++G+ll+ l+++++++P + a++ liG+++l+ G++q+v +a++ gg+ + l++Gi++i++Gl+++f
VIMSS668128 14 IMGVLLLMLAVVIFTFPIENFYAITRLIGLFVLINGVIQIVYRRKAKALVGGNQNWILFMGIVDILFGLIVIF 86
79*********************************************************************97 PP
== domain 2 score: 32.6 bits; conditional E-value: 3.9e-12
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
+Gi+ i++G++++++ ga+++++++++++++++s+i++l+ +f + +g+ ++ ++++ +l i++G++llf
VIMSS668128 73 MGIVDILFGLIVIFNVGASSAFFIYMFAFWFIFSSIAGLF-TF--SG-SGSLKLISVIFNLLGIVFGVILLF 140
8**************************************6.66..44.566778899*************98 PP
== domain 3 score: 18.1 bits; conditional E-value: 1.3e-07
DUF308 5 lliilGilaliwPgaallalviliGvlllvsGivqlvaaf 44
l i++G+++l++P++ +++++++i++ +++ G++ +v a+
VIMSS668128 130 LGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDAL 169
89********************************999886 PP
Or compare VIMSS668128 to CDD or PaperBLAST