PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS958340 to PF03729 (DUF308)

VIMSS958340 has 182 amino acids

Query:       DUF308  [M=73]
Accession:   PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-24   72.6  38.9    8.9e-17   47.5  15.5    3.1  3  VIMSS958340  


Domain annotation for each sequence (and alignments):
>> VIMSS958340  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5  15.5   8.9e-17   8.9e-17       3      72 ..      18      85 ..      16      86 .. 0.92
   2 !   37.8  15.4   9.3e-14   9.3e-14       2      73 .]      73     140 ..      72     140 .. 0.90
   3 !    7.2   4.3   0.00034   0.00034       1      50 [.     126     176 ..     126     182 .] 0.83

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 8.9e-17
       DUF308  3 GilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
                 +++ i++Gi+a+ +P+++++a+ +++G++l+v++i+ ++++f++r+   +g wl+++ G++++i G++++
  VIMSS958340 18 AVCQILFGIAAICFPFTMSIASGLFFGWILIVAAIFAIISGFSSRH--IRGHWLDIICGVIAFITGVIAI 85
                 7999**************************************6666..5558***************986 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 9.3e-14
       DUF308   2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73 
                   G+++ i G++a+ +P+a++l++v+li+ +ll+ G++ql+ af+  +   +   +lll Gi+  +++l+l+f
  VIMSS958340  73 CGVIAFITGVIAIEYPVASALTIVWLIACWLLLVGLTQLFIAFRIVT--ER--NWLLLRGIVNSLIALFLFF 140
                  59*****************************************4444..33..37899***********997 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00034
       DUF308   1 llGilliilGilaliwPgaalla.lviliGvlllvsGivqlvaafaarkke 50 
                  l+Gi+  ++++++++  + ++la l + +G+ ++  G+   + a+++++ +
  VIMSS958340 126 LRGIVNSLIALFLFFSSDKTSLAfLGLAVGFAFVSEGVGMAMLALRLKRLQ 176
                  689************9977666615699***********999999888765 PP



Or compare VIMSS958340 to CDD or PaperBLAST