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Align VIMSS202853 to PF03994 (DUF350)

VIMSS202853 has 299 amino acids

Query:       DUF350  [M=54]
Accession:   PF03994.18
Description: Domain of Unknown Function (DUF350)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-27   82.0  29.8    3.4e-15   42.2   0.8    4.4  4  VIMSS202853  


Domain annotation for each sequence (and alignments):
>> VIMSS202853  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   1.5     2e-09     2e-09       4      54 .]      23      74 ..      21      74 .. 0.97
   2 !   42.2   0.8   3.4e-15   3.4e-15       1      54 []      92     147 ..      92     147 .. 0.98
   3 !    9.6   0.6   5.3e-05   5.3e-05      25      48 ..     193     216 ..     190     221 .. 0.86
   4 !   21.9   6.4   7.4e-09   7.4e-09       6      52 ..     247     296 ..     239     298 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2e-09
       DUF350  4 vGivllllgflvvdlltpgklreeIkegnn.AaaivlagasiavgliiaaaI 54
                 ++++ll l  ++  + ++++ ++e+ e  n A +i +aga+ a+g+++ +aI
  VIMSS202853 23 IAVILLTLMRYLQGWSIRVNSSKELAERDNfAFGISTAGAVAALGIVLTGAI 74
                 89***********************************************998 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 3.4e-15
       DUF350   1 YgvvGivllllgflvvdllt.p.gklreeIkegnnAaaivlagasiavgliiaaaI 54 
                  Yg++G++l+ lg +++d++     + +++I +gn+++aiv a++ ia+++ii+a +
  VIMSS202853  92 YGLFGLILIKLGRFLHDKIAlNeLDKNQQIIKGNVSVAIVDASVAIATAIIIRAVL 147
                  9****************************************************975 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 5.3e-05
       DUF350  25 reeIkegnnAaaivlagasiavgl 48 
                  ++ + +g+ A+ai  ag +ia++l
  VIMSS202853 193 QQALAQGHTAVAIRHAGFMIAMAL 216
                  67889******************8 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 7.4e-09
       DUF350   6 ivllllgflvvdllt.p.gklreeIkegnn.Aaaivlagasiavgliiaa 52 
                  +v+l l ++v+ +l+   ++l +e+++ +n   a v +++sia++li+ a
  VIMSS202853 247 LVVLTLLLFVIKKLVlArINLADEVERQHNiGIAAVEMAISIAIALILTA 296
                  566666666666666655*****************************987 PP



Or compare VIMSS202853 to CDD or PaperBLAST