PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5847527 to PF04028 (DUF374)

VIMSS5847527 has 237 amino acids

Query:       DUF374  [M=69]
Accession:   PF04028.17
Description: Domain of unknown function (DUF374)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-31   92.2   0.4    2.1e-30   90.5   0.3    2.0  2  VIMSS5847527  


Domain annotation for each sequence (and alignments):
>> VIMSS5847527  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.35      0.35      46      59 ..      25      38 ..      19      38 .. 0.70
   2 !   90.5   0.3   2.1e-30   2.1e-30       4      68 ..      73     145 ..      71     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.35
        DUF374 46 remlralkeGesia 59
                   + lr+ +eG+ ia
  VIMSS5847527 25 YKTLRWTREGQAIA 38
                  56788888888775 PP

  == domain 2  score: 90.5 bits;  conditional E-value: 2.1e-30
        DUF374   4 rkkkiaaliSrsrDGeliarvlerlgiktvrGSss........rggaralremlralkeGesiaiTpDGPrGP 68 
                    k++i++l+S+srDGe+iarv++rlg+ ++rGSs         +gg++a+r+m++++k+G  +aiTpDGPrGP
  VIMSS5847527  73 DKPEIRVLVSQSRDGEFIARVIARLGLPSIRGSSLkktdtaknKGGEQAFRDMVKWVKDGGAMAITPDGPRGP 145
                   5789******************************999************************************ PP



Or compare VIMSS5847527 to CDD or PaperBLAST