PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS155485 to PF04074 (DUF386)

VIMSS155485 has 154 amino acids

Query:       DUF386  [M=145]
Accession:   PF04074.16
Description: YhcH/YjgK/YiaL
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-46  144.3   0.0    1.6e-46  144.1   0.0    1.0  1  VIMSS155485  


Domain annotation for each sequence (and alignments):
>> VIMSS155485  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.0   1.6e-46   1.6e-46       1     145 []       1     150 [.       1     150 [. 0.97

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 1.6e-46
       DUF386   1 MIidnlenlery.lkpklkkaieflketdlealeeGkyeidgddlfanvqeyetkpkeeaklEvHrkyiDiqivlegeEtigyaelaekeelkeeyde 97 
                  MI++++ + + + l+++++ka++fl++td+ +le+G +eidg++ fa++ +++t++++e++ EvHr+y+Diq++  geE+ig+a  + +++++e+  e
  VIMSS155485   1 MIFGHIAQPNPChLPAAIEKALHFLRTTDFRTLEPGVVEIDGKNTFAQIIDMTTRDAAENRPEVHRRYLDIQFLAWGEEKIGVAIDTGNNQISESLLE 98 
                  9**********9899*********************************************************************************** PP

       DUF386  98 ekDiafyeedeeessvtlkpgefaiffPedaHrp....egkekvrKvVvKvk 145
                  ++Di+fy+++e+es++++ pg++a+ffP+d+Hrp    +  +++rK+VvKv+
  VIMSS155485  99 QRDIIFYHDSEHESFIEMIPGSYALFFPQDVHRPgcnkSIATPIRKIVVKVA 150
                  ***********************************99855667*******95 PP



Or compare VIMSS155485 to CDD or PaperBLAST