PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3410417 to PF04074 (DUF386)

VIMSS3410417 has 154 amino acids

Query:       DUF386  [M=145]
Accession:   PF04074.16
Description: YhcH/YjgK/YiaL
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-38  116.8   0.0    4.7e-38  116.7   0.0    1.0  1  VIMSS3410417  


Domain annotation for each sequence (and alignments):
>> VIMSS3410417  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   4.7e-38   4.7e-38       1     144 [.       1     147 [.       1     148 [. 0.90

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 4.7e-38
        DUF386   1 MIidnlenlery.lk.pklkkaieflketdlealeeGkyeidgddlfanvqeyetkpkeeaklEvHrkyiDiqivlegeEtigyaelaekeelkeey 95 
                   MI +++++++   l+   +++++++l+  + ++ ++G+y + g++l +nv+ ++t+ ++e+++E+H++yiDiqi+leg+E++ y  + + +e+  e 
  VIMSS3410417   1 MIAGHIKKVDAAgLPpVMIDAIVQALE-SHPAHKAPGSYVL-GERLLMNVMCFTTQAAQEKRAELHQDYIDIQILLEGQEQVRYGLAGSAREC-GER 94 
                   9**********9988355666667775.558999*******.9***************************************99866655544.578 PP

        DUF386  96 deekDiafyeedeeessvtlkpgefaiffPedaHrp....egkekvrKvVvKv 144
                   +e++D+++++  e+e+++ ++pg+f++f+P+++H+p     ++++++KvV+K 
  VIMSS3410417  95 HEAEDYQLCARIEAEQTIIMEPGMFIVFMPGEPHKPgcsiRQPAEIKKVVLKL 147
                   89**************************************999*********7 PP



Or compare VIMSS3410417 to CDD or PaperBLAST