PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::4tsdB to PF04074 (DUF386)

biolip::4tsdB has 181 amino acids

Query:       DUF386  [M=145]
Accession:   PF04074.16
Description: YhcH/YjgK/YiaL
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-23   69.2   0.2    2.6e-23   68.8   0.2    1.2  1  biolip::4tsdB  


Domain annotation for each sequence (and alignments):
>> biolip::4tsdB  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.2   2.6e-23   2.6e-23      36     143 ..      50     167 ..       2     169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 2.6e-23
         DUF386  36 kyeidgddlfanvqey...etkpkeeaklEvHrkyiDiqivlegeEtigyaelaekeelke.eydeekDiafyeedeeessvtlkpgefaiffPed 127
                    ++++ g  +f + q+y   ++k++e+  +E+H+ky+D q++++g E  +   ++  +++ + +yde++D+++ye  +e+s+++l++g+ aiff +d
  biolip::4tsdB  50 QVPL-GHGIFSIEQSYcleHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGIN--QAVIKnPYDEKRDLIVYEPVSEASFLRLHAGMLAIFFEND 142
                    3333.5555555555422256777888********************9555444..444445********************************** PP

         DUF386 128 aHrp.........egkekvrKvVvK 143
                    aH+            +e++ K+VvK
  biolip::4tsdB 143 AHALrfygesfekYREEPIFKAVVK 167
                    ***********9966667******9 PP



Or compare biolip::4tsdB to CDD or PaperBLAST