PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS345705 to PF04217 (DUF412)

VIMSS345705 has 151 amino acids

Query:       DUF412  [M=141]
Accession:   PF04217.17
Description: Protein of unknown function, DUF412
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-62  196.2   0.4    1.5e-62  196.0   0.4    1.0  1  VIMSS345705  


Domain annotation for each sequence (and alignments):
>> VIMSS345705  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.4   1.5e-62   1.5e-62       1     141 []      11     149 ..      11     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 1.5e-62
       DUF412   1 llktlkdGqrYlktwPlekkLaalfpesrvikatklaikvmPalavlalllqlalaksealpqavatalfalslPlQGlyWLGkRaetpLppsllswy 98 
                  +++ +++Gq+Y+ktwP+ek+La++f+e+rvi++t++ai++mP +av++l++q+al +  +l +avatalfalslP+QGl+WLGkR+ tpLpps+l+w+
  VIMSS345705  11 FFSLFRRGQHYAKTWPMEKRLAPVFVENRVIRMTRYAIRFMPPVAVFTLCWQIALGG--QLGPAVATALFALSLPMQGLWWLGKRSLTPLPPSILNWF 106
                  6889****************************************************9..9************************************** PP

       DUF412  99 eeikeklkeegaalkplkekpsYqelaelLkkafeqldksfle 141
                  +e++ kl+e+g+al+p++ kp+Yq la++Lk+af+qldk+fl+
  VIMSS345705 107 YEVRGKLQEAGQALAPVEGKPDYQALADTLKRAFKQLDKTFLD 149
                  *****************************************85 PP



Or compare VIMSS345705 to CDD or PaperBLAST