VIMSS16261 has 385 amino acids
Query: DUF418 [M=163]
Accession: PF04235.16
Description: Protein of unknown function (DUF418)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.7e-52 161.7 16.5 7.7e-52 161.7 16.5 2.3 3 VIMSS16261
Domain annotation for each sequence (and alignments):
>> VIMSS16261
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.3 0.12 0.12 52 69 .. 53 71 .. 11 95 .. 0.48
2 ? -0.8 0.5 0.071 0.071 21 71 .. 65 117 .. 39 137 .. 0.52
3 ! 161.7 16.5 7.7e-52 7.7e-52 1 162 [. 215 374 .. 215 375 .. 0.99
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.12
DUF418 52 levlsmlggla.lalgYva 69
l ++ ++ l+ +al + a
VIMSS16261 53 LDLIGQVKFLTlFALLFGA 71
2222222222212233333 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.071
DUF418 21 lliglavglplallla..llaelaeesallslllevlsmlgglalalgYvali 71
+++++ +gl + l+ + + +ll+++ +l + g+++la+g+v li
VIMSS16261 65 FALLFGAGLQMLLPRGrrWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLI 117
22233333333333332222222222333333333333335555555555555 PP
== domain 3 score: 161.7 bits; conditional E-value: 7.7e-52
DUF418 1 lgrkgllkdgeehkrllrrllliglavglplallla.llaelaeesallslllevlsmlgglalalgYvalillllkkekrrrllrplaavGRmALTnY 98
l+r+g+lk g+ + r++rr+ ++++a+g++++l+++ l+++l + ++++++ll++ ++l+++++a+gY++l++ ++++ +r +l+ ++a vGRmALTnY
VIMSS16261 215 LMRSGWLK-GQFSLRHYRRTGFVLVAIGVTINLPAIaLQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNY 312
69******.****************************************************************************************** PP
DUF418 99 llqsivctllfygyglglfgslgrlallllallifllqlllSklwlrrfrqGPlEwlwRkltyg 162
llq+++ct+lf y+lglf++++rl+ll++++ ++l+++l+S +wlr+frqGP+EwlwR+lt +
VIMSS16261 313 LLQTLICTTLF--YHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLR 374
***********..99**********************************************975 PP
Or compare VIMSS16261 to CDD or PaperBLAST