VIMSS94513 has 385 amino acids
Query: DUF418 [M=163]
Accession: PF04235.16
Description: Protein of unknown function (DUF418)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-52 161.9 16.8 6.5e-52 161.9 16.8 2.3 3 VIMSS94513
Domain annotation for each sequence (and alignments):
>> VIMSS94513
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.3 0.099 0.099 52 70 .. 53 72 .. 10 95 .. 0.46
2 ? -0.9 0.6 0.079 0.079 21 71 .. 65 117 .. 45 137 .. 0.51
3 ! 161.9 16.8 6.5e-52 6.5e-52 1 162 [. 215 374 .. 215 375 .. 0.99
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.099
DUF418 52 levlsmlggl.alalgYval 70
l ++ ++ l ++al + a+
VIMSS94513 53 LDLIGQVKFLtLFALLFGAG 72
22222222220223333333 PP
== domain 2 score: -0.9 bits; conditional E-value: 0.079
DUF418 21 lliglavglplallla..llaelaeesallslllevlsmlgglalalgYvali 71
+++++ +gl + l+ + + +ll+++ +l + g+++la+g+v li
VIMSS94513 65 FALLFGAGLQMLLPRGrrWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLI 117
23333333333333332222222233333333333333345555666665555 PP
== domain 3 score: 161.9 bits; conditional E-value: 6.5e-52
DUF418 1 lgrkgllkdgeehkrllrrllliglavglplallla.llaelaeesallslllevlsmlgglalalgYvalillllkkekrrrllrplaavGRmALTnY 98
l+r+g+lk g+ + r++rr+ ++++a+g++++l+++ l+++l + ++++++ll++ ++l+++++a+gY++l++ ++++ +r +l+ ++a vGRmALTnY
VIMSS94513 215 LMRSGWLK-GQFSLRHYRRTGFVLVAIGVIINLPAIaLQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNY 312
69******.****************************************************************************************** PP
DUF418 99 llqsivctllfygyglglfgslgrlallllallifllqlllSklwlrrfrqGPlEwlwRkltyg 162
llq+++ct+lf y+lglf++++rl+ll++++ ++l+++l+S +wlr+frqGP+EwlwR+lt +
VIMSS94513 313 LLQTLICTTLF--YHLGLFMQFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLR 374
***********..99**********************************************975 PP
Or compare VIMSS94513 to CDD or PaperBLAST