PaperBLAST – Find papers about a protein or its homologs

 

Align Q813Q8 to PF04239 (DUF421)

Q813Q8 has 228 amino acids

Query:       DUF421  [M=135]
Accession:   PF04239.16
Description: YetF C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-47  145.6   0.4    4.2e-47  145.3   0.4    1.1  1  Q813Q8    


Domain annotation for each sequence (and alignments):
>> Q813Q8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.4   4.2e-47   4.2e-47       2     135 .]      82     216 ..      81     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 4.2e-47
  DUF421   2 kskklrrlidgkpivliknGkileenlkkarlsiddLlsqLRqq.gifsisdVeyailEtnGqlsvlkkkekkpvtakdlnikkekenlsvplildGkilken 103
             k++  rr+++g p+++i+nGki+ e+l  ++l+i++L+++LRqq +ifsi++Vey ilE+nG++svlkk+++++ t +dl +k+++  l++ li+dGk+ k+n
  Q813Q8  82 KVRGTRRFFEGYPSIIIRNGKIDREQLSVNHLDINQLQQMLRQQkDIFSIREVEYMILEPNGNISVLKKSKYESPTINDLSLKHKPVYLPISLISDGKVVKDN 184
             88999*************************************8538********************************************************* PP

  DUF421 104 LeeigkdeewLkeelkkqgikdledvflaevd 135
             L+e+g de wL +++k++gi+++edv++ae++
  Q813Q8 185 LREAGFDEGWLYKQIKQKGITKFEDVLYAEWK 216
             ******************************95 PP



Or compare Q813Q8 to CDD or PaperBLAST