PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2205514 to PF04285 (DUF444)

VIMSS2205514 has 424 amino acids

Query:       DUF444  [M=419]
Accession:   PF04285.16
Description: Protein of unknown function (DUF444)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.3e-159  516.0   0.0   4.9e-159  515.9   0.0    1.0  1  VIMSS2205514  


Domain annotation for each sequence (and alignments):
>> VIMSS2205514  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.9   0.0  4.9e-159  4.9e-159       1     418 [.       2     415 ..       2     416 .. 0.97

  Alignments for each domain:
  == domain 1  score: 515.9 bits;  conditional E-value: 4.9e-159
        DUF444   1 iiidrrlngknkslenrqRflrrvkeqikkavadavsersitdiskgekikipikdikepefrygkggkregVlpGnkefkeGdkierpeggggggg 97 
                   +i+drrln++ kslenrqRflrr+k ++++av++ +++r+i+d+ +g +i++pi+++ ep++r+g+gg r+++lpGn+ f+eGd + rp+g++gg+ 
  VIMSS2205514   2 HIVDRRLNPRGKSLENRQRFLRRMKGAVQQAVKRSLQNRNIRDVLDGGEISLPIDGMAEPNLRRGDGGIRDHILPGNRAFVEGDILPRPPGSRGGKP 98 
                   69***************************************************************************************99988765 PP

        DUF444  98 sgegseaGegeDefefelsreEfldllfedLeLPdLekkklekveekktkragytkkGspsnldvkrtlrealkRrialkrpkerelreleeeleel 194
                     ++  +GegeD f+f l+reEfld++++dLeLPdL+k++l+++ee++  ragy+ +Gspsn++v rt r a+ Rr+al+rp+++e+++l++++ee+
  VIMSS2205514  99 --KDAGEGEGEDGFRFVLTREEFLDVFLDDLELPDLAKRRLAETEEETPFRAGYSVSGSPSNIAVGRTTRLAMMRRVALHRPRREEIEALQRQIEEC 193
                   ..457899****************************************************************************************9 PP

        DUF444 195 eaeeeeeeeeeleeleeeieeleerikripfidelDlrYrrvekepkpesnaVmfclmDvSGSMdeakkdlakrfFilLylFlkrkYekvevvFirH 291
                   e++e      +  +le+++++l+e+ +rip+id+lD+rYrr+e+epkp ++aVmfclmDvSGSM+e++kdlakrf++lLylFl+++Y+kve+vFirH
  VIMSS2205514 194 EDDE------SRLALEAKLKSLTEKSRRIPYIDPLDVRYRRFENEPKPVAKAVMFCLMDVSGSMSEHMKDLAKRFYLLLYLFLSKRYKKVEIVFIRH 284
                   7763......457899********************************************************************************* PP

        DUF444 292 tteAkeVdeeeFFysresGGTvvSsalelaeeiieerYppseWNiYaaqaSDGdnwseDsekavellaekllpvvqyfaYieitp.....seeeqtl 383
                   t++A+eVdee+FFy   +GGT+vSsal  ++ ii++r++p+eWNiY+aqaSDGdn+++D + + + l +++lp++qyfaYie+ +     s +++ l
  VIMSS2205514 285 TDKAEEVDEETFFYGPATGGTLVSSALAAMRAIIAARFDPAEWNIYGAQASDGDNAHSDGNLSGQ-LLREILPLCQYFAYIEVGEeggdsSVSRSPL 380
                   *****************************************************************.667799*************99998889999* PP

        DUF444 384 weeyekvaeeeenfamrkikekediypvfrelfkk 418
                   w  y+ +++e + ++mrk+ ++++i+pvf++lf+k
  VIMSS2205514 381 WMLYDGIRSELQPLSMRKVCRRNEIFPVFHDLFQK 415
                   *********99**********************98 PP



Or compare VIMSS2205514 to CDD or PaperBLAST