PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3608047 to PF04304 (DUF454)

VIMSS3608047 has 165 amino acids

Query:       DUF454  [M=115]
Accession:   PF04304.17
Description: Protein of unknown function (DUF454)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-36  111.3   4.3    1.6e-36  111.1   4.3    1.0  1  VIMSS3608047  


Domain annotation for each sequence (and alignments):
>> VIMSS3608047  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   4.3   1.6e-36   1.6e-36       1     114 [.      13     126 ..      13     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 1.6e-36
        DUF454   1 rllllvlGllslalGviGivlPlLPTtpFlLlAafcfarssprlerwLlehklfgpyirdwrekraiplkaKvialllmalsllislllveslwvki 97 
                   r l+ ++G++sla G +G+vlP+LPTtpF++l afcfa++ prl ++L +h +fgp+i +wr++rai  +++v+a l+m ++l++sl+   s  v +
  VIMSS3608047  13 RPLWAAAGVVSLATGSVGAVLPVLPTTPFMILGAFCFAKGAPRLAQRLEQHGIFGPMIAEWRAHRAIAPRVRVVAHLMMGAALVLSLVAGVSGPVLA 109
                   679**************************************************************************************99999999 PP

        DUF454  98 llalvlllvllyllrlp 114
                   + +++ll+ ++y+l++p
  VIMSS3608047 110 VQMTCLLGASAYILSRP 126
                   999**********9998 PP



Or compare VIMSS3608047 to CDD or PaperBLAST