PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS918798 to PF04304 (DUF454)

VIMSS918798 has 128 amino acids

Query:       DUF454  [M=115]
Accession:   PF04304.17
Description: Protein of unknown function (DUF454)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-35  108.2   9.1    1.4e-35  108.0   9.1    1.0  1  VIMSS918798  


Domain annotation for each sequence (and alignments):
>> VIMSS918798  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   9.1   1.4e-35   1.4e-35       1     112 [.       2     113 ..       2     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 1.4e-35
       DUF454   1 rllllvlGllslalGviGivlPlLPTtpFlLlAafcfarssprlerwLlehklfgpyirdwrekraiplkaKvialllmalsllislllveslwvkil 98 
                  r++l++lG++++++++ G+vlPlLPTtpFl+lAa+cf+ ss++++ wL +++++++y+++ ++ ++ ++k+K+++l+++++++++s++++++l+++i 
  VIMSS918798   2 RYVLIALGIVFTVIAFTGAVLPLLPTTPFLILAAICFTNSSRKFKIWLESTQIYKNYVENLKKYKGYTMKEKIRILISLYIVVGFSIFMISNLYIRIG 99 
                  799*********************************************************************************************** PP

       DUF454  99 lalvlllvllyllr 112
                  l++++++ +++l++
  VIMSS918798 100 LMIMVVIQTIVLFT 113
                  **********9965 PP



Or compare VIMSS918798 to CDD or PaperBLAST