PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS588673 to PF04356 (DUF489)

VIMSS588673 has 243 amino acids

Query:       DUF489  [M=192]
Accession:   PF04356.16
Description: Protein of unknown function (DUF489)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-52  163.9   0.1    2.8e-52  163.6   0.1    1.1  1  VIMSS588673  


Domain annotation for each sequence (and alignments):
>> VIMSS588673  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.1   2.8e-52   2.8e-52       1     191 [.      17     229 ..      17     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 2.8e-52
       DUF489   1 drtlALagvlqaaklvqqlArtGqadeea.....leallkslleidp.....estedvygglanlklGletlleqlekksk..kkda..........e 76 
                  +r+lALagv+qa++l +  A tGq +  +     +e+l+k+ l+i+p     ++t d++++l +++lGl+tl++++++  +     +           
  VIMSS588673  17 NRALALAGVFQATQLTHMTAMTGQQSIGEtgnfyFEQLIKASLNIRPalntsTQTLDFFNQLGDIALGLKTLESSINQPFSttP--KskipklpsakL 112
                  799********************996544455669**********9988877899**********************9887331..123455555535 PP

       DUF489  77 ltrYalsllalerkLaknkdllaalgerieqierqlehf..dllhenvlanlaeiYsdtiStlgpriqvkGepevLqqeevaakiRalLLagiRaavL 172
                   + Ya++ll+le+k+ +n++++a ++++ ++i +ql+ f  +++h++++anla+ Y+dt ++++pri v+G++e +++++++++iRa L++g++ a+L
  VIMSS588673 113 PMSYAMALLQLEKKVYSNPEYVAVIEKSQQKILKQLSFFdnNYMHPSIIANLAQAYVDTAGQINPRILVRGNAESFKDPNHTNRIRASLFTGLQLAHL 210
                  69***********************************887799******************************************************* PP

       DUF489 173 WrqlGGsrwqllfsrkkll 191
                  WrqlGGs w+++fs++kll
  VIMSS588673 211 WRQLGGSSWNMIFSKRKLL 229
                  *****************98 PP



Or compare VIMSS588673 to CDD or PaperBLAST