PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS56084 to PF04363 (DUF496)

VIMSS56084 has 106 amino acids

Query:       DUF496  [M=93]
Accession:   PF04363.16
Description: Protein of unknown function (DUF496)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-48  149.3  12.8    1.6e-48  149.0  12.8    1.0  1  VIMSS56084  


Domain annotation for each sequence (and alignments):
>> VIMSS56084  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0  12.8   1.6e-48   1.6e-48       1      93 []       1      93 [.       1      93 [. 0.99

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 1.6e-48
      DUF496  1 lenvlelvrkarrknklkreiednekkirdnqkrvellenlleyikpdmsieeikaiienmksdyedrvddyiiknaelskerrelskklkel 93
                +++v+e+v+ arrknkl+re++dnekk+rdn+krvell nll+yikp+ms+eei  ii+nmksdyedrvdd+iik+ae+skerr++s+++k+l
  VIMSS56084  1 MNSVFEIVSLARRKNKLQRELDDNEKKVRDNRKRVELLVNLLDYIKPNMSHEEILGIIKNMKSDYEDRVDDHIIKSAEISKERRDISRRIKDL 93
                89****************************************************************************************986 PP



Or compare VIMSS56084 to CDD or PaperBLAST