PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::F4IUE7 to PF04367 (DUF502)

SwissProt::F4IUE7 has 268 amino acids

Query:       DUF502  [M=106]
Accession:   PF04367.17
Description: Protein of unknown function (DUF502)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    3.7e-32   96.7   1.8    4.5e-32   96.4   0.1    1.9  2  SwissProt::F4IUE7  


Domain annotation for each sequence (and alignments):
>> SwissProt::F4IUE7  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2     0.099     0.099       6      31 ..      71      96 ..      67      99 .. 0.80
   2 !   96.4   0.1   4.5e-32   4.5e-32       2     102 ..     113     213 ..     112     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.099
             DUF502  6 lillvGllarnllgrkllellerlle 31
                       +++l+ + ++ +++ +++++++ +++
  SwissProt::F4IUE7 71 CVILLPIAITFYITWWFIHFVDGFFS 96
                       67778888999999999999998876 PP

  == domain 2  score: 96.4 bits;  conditional E-value: 4.5e-32
             DUF502   2 lvlllillvGllarnllgrkllellerlleriPlvksiYssvkqlvetll.geekksfkkvvlVeyprkglyalGFvtgee.egelaekege 91 
                        + +++i+lvG++++++lg ++l+l+e++++r+P+v++iY+++kq++ +++ ++++++fk+v++++ pr g ya+GF+t++   ++ +  ++e
  SwissProt::F4IUE7 113 TSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISpDQNTQAFKEVAIIRHPRVGEYAFGFITSTVvLQNYP--TEE 202
                        689***********************************************777888*************************666555..6** PP

             DUF502  92 elvaVfvPtsp 102
                        el++V+vPt++
  SwissProt::F4IUE7 203 ELCCVYVPTNH 213
                        *********86 PP



Or compare SwissProt::F4IUE7 to CDD or PaperBLAST