PaperBLAST – Find papers about a protein or its homologs

 

Align D4ABP9 to PF04379 (DUF525)

D4ABP9 has 480 amino acids

Query:       DUF525  [M=87]
Accession:   PF04379.14
Description: ApaG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-33   99.4   0.5      1e-32   98.6   0.1    1.7  2  D4ABP9    


Domain annotation for each sequence (and alignments):
>> D4ABP9  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.86      0.86      31      43 ..      58      70 ..      57      73 .. 0.76
   2 !   98.6   0.1     1e-32     1e-32       2      86 ..     295     383 ..     294     384 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.86
            EEEEEEEETTS-E CS
  DUF525 31 sRhweitdadgkv 43
            +++w it+++++ 
  D4ABP9 58 KKYWLITEEEKAR 70
            689***9988764 PP

  == domain 2  score: 98.6 bits;  conditional E-value: 1e-32
             E--BTTB--EEEEEEEEEEE-S....SS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEEEEEEEEE CS
  DUF525   2 eqsspeeekyvfaYsirienes....eesvqLlsRhweitdadgkveevegeGvvGeqPlLepgesFeYtSgvsletpsGsmeGsytmv 86 
             e ss +  +y+f+Y+irie++     e+++qL sR+w+it+a+g veev+g+GvvGe P+++pg  +eYtS+++++t+sG+meG+yt++
  D4ABP9 295 ELSSVHPPHYFFTYRIRIEMSRdalpEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRIYEYTSCTTFSTTSGYMEGYYTFH 383
             56788899************99999999**********************************************************985 PP



Or compare D4ABP9 to CDD or PaperBLAST