PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS304034 to PF04391 (DUF533)

VIMSS304034 has 219 amino acids

Query:       DUF533  [M=179]
Accession:   PF04391.12
Description: Protein of unknown function (DUF533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-52  164.0   0.4    1.7e-52  163.7   0.4    1.1  1  VIMSS304034  


Domain annotation for each sequence (and alignments):
>> VIMSS304034  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.4   1.7e-52   1.7e-52       5     178 ..      33     209 ..      29     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.7e-52
       DUF533   5 gaaaggllglllGskkgr....klgkkalklGglAalGglAykayqnwqanqqeaapqsapkf.q.e.eeeekaelllrAmiaAAkADGhideeErqr 95 
                  ++a+ggl+gll+++k++r    k+g++al +Gg A+ G++ +++y++      +aa q +p+f   +   +e+ e+l+ A++ AAk+DGhid++Er++
  VIMSS304034  33 PGALGGLAGLLVANKSARklltKYGTNALLVGGGAVAGTVLWNKYKDKI----RAAHQDEPQFgAqStPLDERTERLILALVFAAKSDGHIDAKERAA 126
                  6789************8888889***********************543....33333344443222367889999999******************* PP

       DUF533  96 IlqeleelgldaeekalledeLrkPldlqelaaavknpelaaevYlaSllaidedsaaEraYLdeLaqaLgLdpelvaeleaq 178
                  I  +l+e+g++++ + l+e+++++Pld+q+la  v+n+e+a e+Y++S++aid d+++Er+YL++L +aL++++++++ +e++
  VIMSS304034 127 IDLQLREAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVREGIERD 209
                  ********************************************************************************986 PP



Or compare VIMSS304034 to CDD or PaperBLAST