PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS506094 to PF04391 (DUF533)

VIMSS506094 has 226 amino acids

Query:       DUF533  [M=178]
Accession:   PF04391.16
Description: Protein of unknown function (DUF533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-67  212.7   9.9    2.1e-67  212.3   9.9    1.2  1  VIMSS506094  


Domain annotation for each sequence (and alignments):
>> VIMSS506094  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   9.9   2.1e-67   2.1e-67       2     178 .]      40     222 ..      39     222 .. 0.97

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 2.1e-67
       DUF533   2 lgggaaaggllglllGgkkarklggkalklGglAalgglAykayqnwqanqseaaqeeaaq.....e.eeeeekaelllrAmiaAAkADGhideeEra 93 
                  lggga+ +g+lglllG+kkark+ggk++ +Gg+Aalg+lAy+ay ++q nq+ +a+++a+q     + +++e++++++l Ami AAkADGhi  +Er+
  VIMSS506094  40 LGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQtldrlPpAQAEQHSNAVLVAMIGAAKADGHIGPDERQ 137
                  689*************************************************99999988888988547***************************** PP

       DUF533  94 rIvqeleelgldaeeqalleaeLakPldlaelaaavktpelaaevYlaSllaidedsaaEraYLdeLaeaLkLdpelvaeleqqv 178
                   +++el++l+ da ++a+leaeLa+Pld+a +a++++tpe+ ae+YlaSll+ de+s++EraYLdeLa++LkL++el+++le+qv
  VIMSS506094 138 LLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQV 222
                  **********************************************************************************997 PP



Or compare VIMSS506094 to CDD or PaperBLAST