PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2123798 to PF04393 (DUF535)

VIMSS2123798 has 288 amino acids

Query:       DUF535  [M=281]
Accession:   PF04393.17
Description: Protein of unknown function (DUF535)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-85  271.7   1.9    4.3e-85  271.5   1.9    1.0  1  VIMSS2123798  


Domain annotation for each sequence (and alignments):
>> VIMSS2123798  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.5   1.9   4.3e-85   4.3e-85       2     280 ..      17     279 ..      16     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 271.5 bits;  conditional E-value: 4.3e-85
        DUF535   2 klkeakkrlkfllrsllnprqtrkllqflnqepllkallkaqprllekllrpylskrlsakerlaaivehyrfleeklsaellkklleqegltLael 98 
                   +++++ +r++f lrs+l+++q++k+ +f n +p+l++llka+p++++++++++l+kr++a++rl++++++++fl +++ +  l+ l+ + +++++e 
  VIMSS2123798  17 HKSYRLRRFRFWLRSVLHASQVKKFSRFANRHPELSELLKAYPNYSYPVIHRFLDKRFNAERRLEIVCDNLTFLPQQFAQYHLPPLWVK-PISFGE- 111
                   578899*********************************************************************************99.*****9. PP

        DUF535  99 egkeeedfelrLsinagqrkEGelaLelrd.eekqllysltFtllreegekallIGglQGpkkeeekevvkqlTKachGlrPkrLlvealrllaqal 194
                         dfe+rL+in+ q +EG++aLelr+ ++ +l+y ltF ++    e++llIG++QG+++e++k++vk lTK+chGlrP++Ll+e+++lla++l
  VIMSS2123798 112 ---FIPDFEIRLNINEYQAMEGFWALELRQkSSRRLVYLLTFGKI----EQSLLIGAIQGANTENAKDLVKFLTKQCHGLRPAYLLIEVMKLLAHTL 201
                   ...999************************7788899********....899********************************************* PP

        DUF535 195 gveeilavsnkahvyralryrlkkkkklladYdefWeelggeakkkeyyeLPleeerkdleeiaskKRaeYrrRyalldqlaaqva 280
                   g+ ++l++++k    +++++r+ ++k+++++Yd+++ e+gg    +ey++LPl+ + kdl++++skKR++Yr+R+++ld+la  ++
  VIMSS2123798 202 GY-QLLGIPHK----YQNKSRFIQSKRYTVNYDTLFSESGG--LLQEYWQLPLALN-KDLTDVPSKKRSMYRKRFEMLDKLADVIQ 279
                   **.********....899***********************..8999******988.************************98876 PP



Or compare VIMSS2123798 to CDD or PaperBLAST