PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS12564 to PF04402 (SIMPL)

VIMSS12564 has 250 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.18
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-49  155.6   8.1    1.3e-49  155.4   8.1    1.0  1  VIMSS12564  


Domain annotation for each sequence (and alignments):
>> VIMSS12564  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   8.1   1.3e-49   1.3e-49       1     204 [.      48     247 ..      48     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 1.3e-49
       SIMPL   1 itVtGeaevevapDlatvtlgvetegkdaaeaqaevaervnavlaalkaaagieekdiqtsglsvspeydykngkrkitgyrasqsltvtvrdldklge 99 
                 +tVtG+a+ +v+  l + +l+ve+++++a+++q+++aer+n+++a+l+++  +  +++qt+gl+++p+y y+n++r+++gy +s++++++    d++g+
  VIMSS12564  48 LTVTGQASESVPTTLTEAQLTVEVQADTADQVQTAIAERSNRLVAYLRSQ-RV--DKLQTQGLQLQPNYVYSNNERRLEGYIGSNTVSFQY-PSDQVGK 142
                 69**********************************************65.67..5589********************************.9999*** PP

       SIMPL 100 lldalveaganridgvsfslsde..delreearkeAvkdArakAealAkalgvklgrvvsisesgasgapppppaamaaaaaaaaaaaaatpiepgeit 196
                 +ld++v aga ridg++f  + e  ++++++a+ +A++dA+a+A+++ ++l+++ +++v+i ++ ++   +p+p  ++a aa+ +a++a+tpi +g++t
  VIMSS12564 143 ILDEAVRAGASRIDGIRFIATPEtlKAAEQKALVAATADAQAQARVVLSSLNLTPQNIVRIVINPSPD--QPMPLFRGALAASPMAESAPTPIISGDQT 239
                 ******************655444899999*********************************54333..444555666666699************** PP

       SIMPL 197 vsasVtvt 204
                 v+a+Vt++
  VIMSS12564 240 VQATVTLE 247
                 *****987 PP



Or compare VIMSS12564 to CDD or PaperBLAST