PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS60945 to PF04402 (SIMPL)

VIMSS60945 has 236 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.18
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-39  120.7   2.2    6.4e-39  120.4   2.2    1.1  1  VIMSS60945  


Domain annotation for each sequence (and alignments):
>> VIMSS60945  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   2.2   6.4e-39   6.4e-39       1     204 [.      31     230 ..      31     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 6.4e-39
       SIMPL   1 itVtGeaevevapDlatvtlgvetegkdaaeaqaevaervnavlaalkaaagieekdiqtsglsvspeydykngkrkitgyrasqsltvtvrdldklge 99 
                 +++ +e +++va Dl++vtl  e++g d+a+ +ae ++ +na++a +++ +g+    i+ ++ + +p+yd  ++ +kitg+r +++l+++++d+++lg+
  VIMSS60945  31 VSLHAEVSQQVAHDLMQVTLYSENQGSDPAKLAAETTSVLNAAVADARKVKGV---TISLGSRNSYPVYD--DKGQKITGWRERAELRLESSDFAALGQ 124
                 5778999*****************************************99999...9*************..8************************** PP

       SIMPL 100 lldalveaganridgvsfslsde..delreearkeAvkdArakAealAkalgvklgrvvsisesgasgapppppaamaaaaaa..aaaaaaatpiepge 194
                 l ++l+ +   +++g++fs++d   ++ +++++k Av++++++A+ l++alg k  ++vs+s+++a gap+p p +++aa++a  +  +a a++ie+g+
  VIMSS60945 125 LSADLLGKL--KMGGMDFSIADAtrKKNEDQLMKGAVDAFKERAQLLTEALGGKGYKLVSLSVNSA-GAPRPYPVMRMAAMKAdaSFGGAQAPEIEAGT 220
                 **8888853..69********77656667799999****************************544.44555555555555556899************ PP

       SIMPL 195 itvsasVtvt 204
                 ++v+++  ++
  VIMSS60945 221 SQVTVNADGV 230
                 ****998765 PP



Or compare VIMSS60945 to CDD or PaperBLAST