PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS833486 to PF04402 (SIMPL)

VIMSS833486 has 233 amino acids

Query:       SIMPL  [M=200]
Accession:   PF04402.14
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-18   53.7   0.6    2.5e-18   53.4   0.6    1.1  1  VIMSS833486  


Domain annotation for each sequence (and alignments):
>> VIMSS833486  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.6   2.5e-18   2.5e-18       1     160 [.      37     205 ..      37     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 2.5e-18
        SIMPL   1 ItVtGsaevevapDqatltlsvesegkdaaeakaevaekmnavlealkklgikekdiqtsslslkpeysy..engknkitgyeasqsltvkfrdldk. 95 
                  ++V+G +++ev++D+ +l +  + ++++++ +++e+++  ++++++l+k+gike++i+ +s ++  + s   +n++++   y  +++l + +++ +  
  VIMSS833486  37 VSVKGLSQKEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLEKQGIKEDEISYNSPNIIDRLSDpySNDTQAAYRYIGTANLLIYTQNVKLg 134
                  79*******************************************************88886663222225455555655677666666655444442 PP

        SIMPL  96 ...lgevldaavka.an.eingvsf.slsde.delrdeareeAvkdArakAealAkalgvklgkvvsisesg 160
                     l+++ + ++k  +  +i+  ++  l  + ++ + +++eeA+ +Ar+ A + A+ ++++lgk+++ s+++
  VIMSS833486 135 ksiLENISS-LAKFgIVtKIDDYDIeYLYTKlNDIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQ 205
                  233333332.222111123444444222222348899****************************8888732 PP



Or compare VIMSS833486 to CDD or PaperBLAST