PaperBLAST – Find papers about a protein or its homologs

 

Align WP_000669858.1 to PF04402 (SIMPL)

WP_000669858.1 has 248 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.18
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-54  169.6   9.0    6.7e-54  169.4   9.0    1.1  1  WP_000669858.1  


Domain annotation for each sequence (and alignments):
>> WP_000669858.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   9.0   6.7e-54   6.7e-54       1     205 []      30     231 ..      30     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 6.7e-54
           SIMPL   1 itVtGeaevevapDlatvtlgvetegkdaaeaqaevaervnavlaalkaaagieekdiqtsglsvspeydykngkrkitgyrasqsltvtvrdld 95 
                     i ++G+a+v+++pD+at+ + v + +kdaa+a+++++erv++ l++l++ ++i++kdi+ ++l+++p ydy+ngk+ ++gyra ++++vt+r+ld
  WP_000669858.1  30 IVTSGTASVDAVPDIATLAIEVNVAAKDAATAKKQADERVAQYLSFLEQ-NQIAKKDISAANLRTQPDYDYQNGKSILKGYRAVRTVEVTLRQLD 123
                     678*********************************************5.58******************************************* PP

           SIMPL  96 klgelldalveaganridgvsfslsdedelreearkeAvkdArakAealAkalgvklgrvvsisesgasgapppppaamaaaaaaaaaaaaatpi 190
                     kl++lld +++ g+n+i++vs++++++d+++++ark+A++dA ++A+alA+ ++ klg+v+s++++ +  +++p+p  ++++aa a   +a++++
  WP_000669858.1 124 KLNSLLDGALKVGLNEIRSVSLGVAQPDAYKDKARKAAIDDAIHQAQALAAGFNSKLGPVYSVRYHVS--NYQPSPVVRMMKAADATPVSAQETY 216
                     *****************************************************************433..3344455555555557888888888 PP

           SIMPL 191 epgeitvsasVtvtf 205
                     e+ +i+   +V v+f
  WP_000669858.1 217 EQPTIQFDDQVDVVF 231
                     899**********98 PP



Or compare WP_000669858.1 to CDD or PaperBLAST