PaperBLAST – Find papers about a protein or its homologs

 

Align WP_050815920.1 to PF04402 (SIMPL)

WP_050815920.1 has 242 amino acids

Query:       SIMPL  [M=200]
Accession:   PF04402.14
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-24   71.9   1.8    6.2e-24   71.7   1.8    1.1  1  WP_050815920.1  


Domain annotation for each sequence (and alignments):
>> WP_050815920.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   1.8   6.2e-24   6.2e-24       1     159 [.      39     209 ..      39     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 6.2e-24
           SIMPL   1 ItVtGsaevevapDqatltlsvesegkdaaeakaevaekmnavlealkklgikekdiqtsslslkpeysy..engknkitgyeasqsltvkfrdl 93 
                     ItVtG ++ ++ +D a +t+ v+ +g+++++a+++++  +++ l++l+ +g+++++iq + l  +++      ng+   t + a+q +++++ d 
  WP_050815920.1  39 ITVTGASTERIRSDYADWTVVVQGSGASQQAAYQALQPDLQRTLAFLRTQGVPDSSIQLAVLESSSNDIRnrMNGALIKTEWSARQPIRISTPDV 133
                     9***********************************************99*****99888877754444453344444444*********99666 PP

           SIMPL  94 dklgevldaavka.aneingvsfslsde.......delrdeareeAvkdArakAealAkalgvklgkvvsise.....s 159
                       +++v   + +  +   +gvs++++ +       ++ r +++++A++dAr++A a+A ++g+ +g + + +      +
  WP_050815920.1 134 ILISKVSRSIGSLvG---DGVSLTIQPPaytytklADKRVDMLAKATADARKRAVAIAGQAGSGIGAITKADTgtfqiT 209
                     557777766655433...4788887744455656566677**************************9966665322221 PP



Or compare WP_050815920.1 to CDD or PaperBLAST