PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::1in0B to PF04461 (DUF520)

biolip::1in0B has 162 amino acids

Query:       DUF520  [M=161]
Accession:   PF04461.17
Description: Protein of unknown function (DUF520)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-69  219.9   3.5    1.2e-69  219.7   3.5    1.0  1  biolip::1in0B  


Domain annotation for each sequence (and alignments):
>> biolip::1in0B  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.7   3.5   1.2e-69   1.2e-69       1     161 []       1     161 [.       1     161 [. 1.00

  Alignments for each domain:
  == domain 1  score: 219.7 bits;  conditional E-value: 1.2e-69
         DUF520   1 psfDivsevdlqevknAvdqakkeietRfDfkgskaeielkekekeitltaesefklkqvldilksklvkrgvdlkaldvgkvekasgkkvkqevk 96 
                    psfDivse+ l+ev+nAv++a++ ++tR+Df+g++a iel+ek+++i++t+es+f+l+q+++il   ++krg++ ++ld+  +++++gk +++e+k
  biolip::1in0B   1 PSFDIVSEITLHEVRNAVENANRVLSTRYDFRGVEAVIELNEKNETIKITTESDFQLEQLIEILIGSCIKRGIEHSSLDIPAESEHHGKLYSKEIK 96 
                    7*********************************************************************************************** PP

         DUF520  97 lkegidkekakkivklikdsklkvqaqiqgdevRvtgkkrDdLQeviallkeedldlplqftNfr 161
                    lk+gi++e+akki+kl+kdsk+kvq+qiqg++vRvtgk+rDdLQ+vi+l+k+++l++p+qf+Nfr
  biolip::1in0B  97 LKQGIETEMAKKITKLVKDSKIKVQTQIQGEQVRVTGKSRDDLQAVIQLVKSAELGQPFQFNNFR 161
                    ****************************************************************9 PP



Or compare biolip::1in0B to CDD or PaperBLAST