VIMSS42272 has 258 amino acids
Query: DUF554 [M=220]
Accession: PF04474.16
Description: Protein of unknown function (DUF554)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-63 200.6 19.2 1.4e-63 200.3 19.2 1.0 1 VIMSS42272
Domain annotation for each sequence (and alignments):
>> VIMSS42272
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 200.3 19.2 1.4e-63 1.4e-63 2 218 .. 9 249 .. 8 251 .. 0.94
Alignments for each domain:
== domain 1 score: 200.3 bits; conditional E-value: 1.4e-63
DUF554 2 GtivNvlaillGsllGlllkkrlperlketlmqalGlvvlliGismalks......e..nlllvilslvlGaliGelldlekrlerlgeklekklkkkk 92
Gt++N++a+llG+l+Gl+++ rlper+++tl+q+l+lv+l+i+++ma + + ++l +++l+ G ++Ge+l +e+ l+rlg+ l++++++++
VIMSS42272 9 GTFINIAAVLLGTLIGLTVGGRLPERTQRTLLQTLSLVTLFIALDMAGSLnkvsggQvpGVILALITLAAGVVVGEALGIEEGLNRLGDSLKRRFRGGG 107
9**********************************************44333444415599999999*****************************999 PP
DUF554 93 efaegfvtasllfcvGamailGsleeGltgdasiLltksiLDgvtaiilastlGigvlfsavpvlvyqglltllAsllkpll..........teeviae 181
f+egfv+asllfc+G+m+++G l++Gltgd+s+ ++ks+LDg++a++la ++Gigv fs++++l++qg+++l+A+ +++ l t++++
VIMSS42272 108 LFTEGFVAASLLFCIGPMTVIGGLQNGLTGDSSTYVLKSTLDGIAALALAGAYGIGVGFSTLTILLVQGGISLAAGSFAAGLlggadpeilrTNPYVLL 206
9**************************************************************************99988888***999999999**** PP
DUF554 182 lsavGgllilaiGlnl......leikkikvanllPalllavll 218
++ vGgl+i++i++nl ++ k+++v++++Pallla+l
VIMSS42272 207 ITGVGGLMIVGISWNLmlgglgMDDKRVRVGSMMPALLLAPLG 249
****************888888899**************9986 PP
Or compare VIMSS42272 to CDD or PaperBLAST