PaperBLAST – Find papers about a protein or its homologs

 

Align P28320 to PF04502 (Saf4_Yju2)

P28320 has 278 amino acids

Query:       Saf4_Yju2  [M=333]
Accession:   PF04502.17
Description: Saf4/Yju2 protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-50  158.2  14.1    2.8e-50  157.9  14.1    1.1  1  P28320    


Domain annotation for each sequence (and alignments):
>> P28320  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9  14.1   2.8e-50   2.8e-50       1     222 [.       9     257 ..       9     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 2.8e-50
  Saf4_Yju2   1 kYyPPDfDpski........prerarknrqlvvRlmaPfnirCktCgeyIykGkkFNarkekVenetYl.gipIfrFyiKCtrClaeiefkTDPkntdYv 91 
                kYyPPD++p           ++ +  ++    +Rlm+Pf++rC +C+eyI k +kFN +ke + +e+Yl +i+I+r  i C+rC + i f+TDP n+dYv
     P28320   9 KYYPPDYNPLEAeklsrkmaKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKE-LLKEKYLdSIKIYRLTISCPRCANSIAFRTDPGNSDYV 107
                9********8886555542223333367999******************************.55569*978***************************** PP

  Saf4_Yju2  92 ieeGatRnfeaek.....................leeeeakreekereeeeaedamkklEkrtkdskkemealesLeeLkelnqrqakvdyeamlelrre 170
                +e G+ Rn+ ++k                       e+e++++ek   +e+a+d+m  lEkr ++ ++e+e  e+Le+L++ n +    + ++m++  ++
     P28320 108 MEVGGVRNYVPQKpnddlnaktavesidetlqrlVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELENLRKKNLEM--SQRAEMINRSKH 205
                ************99*************9999998666666777888888899****************************655544..566777777776 PP

  Saf4_Yju2 171 freekkereeeeedeealkeklsl.eiiellpedeedkkeaalve.gksskelf 222
                +++ek   +++   ++++ + +   ++ +  p +++d+k+  l++ ++++ +++
     P28320 206 AQQEKAVTTDDL--DNLVDQVFDNhRQRTNKPGNNNDEKRTPLFNpTSTKGKIQ 257
                666666555553..6666655544233333345556655555555433333333 PP



Or compare P28320 to CDD or PaperBLAST